Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele40g0307 ATGACAGGCATAGAGTATATGGTCAGTGAAGTCATGGAACCGCACCTTTTTGTTATGCGCAAGCAAAAGAGAGATTGCCCTGAGAAAGTTACACCGATGCTAGCTTATTACATCTTGGATGGCTCAATATACCAAGCCCCACAGCTATGCAATGTTTTTGCTGCTCGAATTGGAAGGGCACTATACCATATACAGAAGGCTTTTAGTACAGCTGCGTCAAAGTTGGAGAAGATAGGATATGCGGATTCTGAAAATGAGCCTGCAGGGCCAGAAACAAAGGCTGGTAAAGAGACAATTGACATAAAGGAAGTTATGCGGGTGGATCACATTCTTGCATCCCTACAGCCTCCAGCTCCACCACCATTTCCTGAAGGTTACAATCCGCCTCCAACTGCGAAAACTGAGAAAGGAGCCGAAGGTCAAGAAACAGGAGAATCGCAAGCTCCTAATATTGATCCTATAATTGATCAAGGACCGGCAAAGAGGATGAAAGTTTGA 498 0.4478 MTGIEYMVSEVMEPHLFVMRKQKRDCPEKVTPMLAYYILDGSIYQAPQLCNVFAARIGRALYHIQKAFSTAASKLEKIGYADSENEPAGPETKAGKETIDIKEVMRVDHILASLQPPAPPPFPEGYNPPPTAKTEKGAEGQETGESQAPNIDPIIDQGPAKRMKV 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele40g0307 165 MobiDBLite consensus disorder prediction 114 128 - -
Lele40g0307 165 Pfam MED6 mediator sub complex component 1 73 IPR007018 GO:0003712|GO:0006357|GO:0016592
Lele40g0307 165 MobiDBLite consensus disorder prediction 112 165 - -
Lele40g0307 165 Gene3D Mediator complex, subunit Med6 1 71 IPR038566 -
Lele40g0307 165 PANTHER MED-6-RELATED 1 164 IPR007018 GO:0003712|GO:0006357|GO:0016592
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele40g0307 Lele-ChrLele40 2479776 2481376 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR MED6 Lele40g0307 Med6 5e-22 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele40g0307 40 2479776 2481376 Lele40g0307 40 2479776 2481376 ECH
Lele37g0344 37 2866503 2869340 Lele40g0307 40 2479776 2481376 hybridization
Lele38g0328 38 2595120 2604913 Lele40g0307 40 2479776 2481376 hybridization