Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele40g0301 ATGGATGGTCTGACTTGGGATGACTCAAATGCTGCGGAGGACCTACCCATATTGTGGAGCAATATAGAACAACAAGAGCTTGAAGCAAGCTTGAATCCAAGCTTTCCTCTAACCGGTCATCATCATCACCATCATCTATATGCAGATTCTCGGAAAGGATTGATCAAAGAGATGGTTCAATTATCAGAAGCTGATGAAGCAGAATTAGGAGCTACAACTACAAGTTCAAAGACAAATCTTCTGTCACAGCTAGTAGGTGGTCCCAGCTGCTGGGCTGGTGGTGGTGGATCTTACAGTATGAATAACCCATTTGGTAATTTTGATCCTCCTGCAGAATTCAACATGGCCCACCAACAACAACAACAACATCATCCACAACAACTTGTCAATAATAACAATAATGGCTTACAAAATGGTGGTACCATATCTGCAGCTGAGTCACTAGATTGCTTGTTCTCAGCTACAAATAGCAACACAGAAACTACATCTGTTGAAGATGACGGAGTCTCCACCATTATGTTACCTGATTTCAGAAGATCATCCTTATGGAGCTTTAGTAGTTATAATAACAATGGAGGAAGTGAATCTGAGAGTACTACTAATGCTGATCATGAAGCATTATCTCAGTGTTCTTCAGATCTTTATGCAAATCAAGGAATAGTAAAAATTGCAGAATCCACCAAGACTAACAAGTGTTCAAAACGGAGCATTCATGAAGCCTTTGATCAATATCCCTACTTCAGCATTGAAGAAGGTGGTTCAAGTTCTTCATTCAGGCTCATTAAGGAGAAGAACAACGACAACGACAATAATCTACCAAAACCCAAAAGACCCAGATGGGATTCTAATCTTCCAACTTCTTCAAACATCAATTTCAAGCAGCCCCATAATTCATCAACAACAACATCATCTTCCGTGGAAGAACCAGACCCGGATGCCATAGCACAGATGAAAGAGATGATATATAGGGCTGCAGCATTCAGGCCTGTGAATTTAGGAATGGAGGTGGTGGAGAAGCCAAAGAGGAAGAATGTGAAGATATCATCAGATCCTCAAACTGTGGCTGCAAGGCTGAGAAGGGAGAGAATAAGTGAAAGAATTAGGGTTTTGCAGAAACTGGTTCCTGGTGGAAGCAAGATGGACACTGCTTCAATGCTTGATGAAGCTGCAAATTACCTCAAGTTTCTAAGGTCACAAGTGAAAGCATTAGAGAGTCTAGGAAGCAAAGTTGAGGCCATGAATTGTCCTCCAACAAATATTGCCTTCTCTTTTAACCCTTCTTTTACCATGCAGTTTAACCCTAGCTATCATCATATCCAACATTGA 1326 0.4095 MDGLTWDDSNAAEDLPILWSNIEQQELEASLNPSFPLTGHHHHHHLYADSRKGLIKEMVQLSEADEAELGATTTSSKTNLLSQLVGGPSCWAGGGGSYSMNNPFGNFDPPAEFNMAHQQQQQHHPQQLVNNNNNGLQNGGTISAAESLDCLFSATNSNTETTSVEDDGVSTIMLPDFRRSSLWSFSSYNNNGGSESESTTNADHEALSQCSSDLYANQGIVKIAESTKTNKCSKRSIHEAFDQYPYFSIEEGGSSSSFRLIKEKNNDNDNNLPKPKRPRWDSNLPTSSNINFKQPHNSSTTTSSSVEEPDPDAIAQMKEMIYRAAAFRPVNLGMEVVEKPKRKNVKISSDPQTVAARLRRERISERIRVLQKLVPGGSKMDTASMLDEAANYLKFLRSQVKALESLGSKVEAMNCPPTNIAFSFNPSFTMQFNPSYHHIQH 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele40g0301 441 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 347 396 IPR011598 GO:0046983
Lele40g0301 441 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 156 427 IPR045843 GO:0003700|GO:0006355
Lele40g0301 441 MobiDBLite consensus disorder prediction 281 309 - -
Lele40g0301 441 Coils Coil 386 406 - -
Lele40g0301 441 Pfam Helix-loop-helix DNA-binding domain 357 396 IPR011598 GO:0046983
Lele40g0301 441 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 353 410 IPR036638 GO:0046983
Lele40g0301 441 MobiDBLite consensus disorder prediction 262 276 - -
Lele40g0301 441 Gene3D - 352 415 IPR036638 GO:0046983
Lele40g0301 441 SMART finulus 353 402 IPR011598 GO:0046983
Lele40g0301 441 MobiDBLite consensus disorder prediction 261 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele40g0301 Lele-ChrLele40 2427074 2428399 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele40g0301 119 440 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 46.988 4.11e-71 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele40g0301 HLH 4.5e-05 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele43g0452 43 3970114 3974005 Lele40g0301 40 2427074 2428399 CCT
Lele44g0442 44 3315561 3317656 Lele40g0301 40 2427074 2428399 CCT
Lele41g0943 41 18947521 18948132 Lele40g0301 40 2427074 2428399 CCT
Lele42g0912 42 21868968 21869579 Lele40g0301 40 2427074 2428399 CCT
Lele40g0301 40 2427074 2428399 Lele40g0301 40 2427074 2428399 ECH
Lele37g0341 37 2851341 2852666 Lele40g0301 40 2427074 2428399 hybridization
Lele38g0322 38 2539060 2540382 Lele40g0301 40 2427074 2428399 hybridization