Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele40g0271 ATGTTCCACGGCCTCCATCATCAACAGAATATGTCTAATTTGATGACTACTTCTGCATCTGCTGAATCCAATGTTTCAATTTGTCCTCCTCATCATCAACAATACCTGGCTTCGTCTCAATTATCTCAGCCAGTGAAGAAAAAGAGAAACCTCCCTGGCAACCCAGACCCAGAGGCTGAAGTGATCGCCTTGTCGCCAAAGACTCTGCTAGCGACGAACAGGTTCATATGTGAGATCTGCAACAAAGGGTTTCAGAGGGACCAGAATCTGCAGCTTCATAGAAGAGGGCACAATCTGCCATGGAAGCTGAAGCGGAGAACCAGCAAAGAGATTATAAGGAAGAAGGTGTACGTGTGCCCAGAACCAACCTGCGTCCACCATGAACCTTCAAGAGCACTCGGAGACCTCACAGGGATCAAGAAGCACTTCTGCAGAAAGCACGGCGAGAAGAAGTGGAAATGCGATAAGTGTTCCAAAAGGTACGCTGTTCAATCCGATTGGAAGGCTCATTCCAAAACCTGTGGCAGCAGAGACTACAGATGTGACTGTGGAACTCTCTTCTCTAGGAGGGACAGTTTCATAACGCACAGAGCATTCTGTGATGCATCAGCAGAAGAGAGTTCAAGATCATCACGAAACCACCACCAAGTTCTTCTTCTTCCCTCTTCACAACAACCTCACTTAGACACTTCTACTTATTCTAGTCTCAGGCAAGGATTTCATCAGATTCCCTCTTGGCTTGGTGGCCCACCCACTAGCTCAGCCATAGATCACCACCGTCAACTTCATCATCTTATAAGCCATGAAAGTCCAAACCTTAACCCTACTGCTACTAGCCTCGGGCCCACCACCACCAGCACTAGTTTTCTTCCAGGTCCAGCGCCTTCTTCGCACATGTCTGCCACAGCCTTGCTTCAGAAAGCGGCTCAGATGGGTTCGACCCTCAGCAAAACCGGTTCGTCCATTCTCAGGACCCACCACAACAATACCACTAGTCACGTGTCTGCTACTACCACCGATCTCTCTGCCGGTTTTAAACCTCAAGGTCACGTGACCACGACCAGCCATGGCTTCTCCTTGTCTCCTTTCTCTTTCTCTTCTTCTACTACTTCTGATCAGTTTGGAGTTGATGCGGGTTTTTTGAAAGAGGCTTTGATTATTAACGATGGGATTTTGAATCCCAATAAGAAAGATGCTAAGTTGCATGACGGTGCTCTTTTCAAAACAACCGACTCTGGTGGCAGCGGTCGGAGAAGTGGCGGTGGTAGTGTTGGGAATGAGGGTTTGACGAGAGACTTCTTGGGTCTGAAACCTCCTTCCCATAATGATATTCTCAGCATGGCTGGTATTGGGAACTGCATAAGCTCTTCTTCTTCTTCCTCCCACCAGGATCAGCCAATTCGTCAATTCCAATGGCAAGCTTAA 1425 0.4793 MFHGLHHQQNMSNLMTTSASAESNVSICPPHHQQYLASSQLSQPVKKKRNLPGNPDPEAEVIALSPKTLLATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKRRTSKEIIRKKVYVCPEPTCVHHEPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGSRDYRCDCGTLFSRRDSFITHRAFCDASAEESSRSSRNHHQVLLLPSSQQPHLDTSTYSSLRQGFHQIPSWLGGPPTSSAIDHHRQLHHLISHESPNLNPTATSLGPTTTSTSFLPGPAPSSHMSATALLQKAAQMGSTLSKTGSSILRTHHNNTTSHVSATTTDLSAGFKPQGHVTTTSHGFSLSPFSFSSSTTSDQFGVDAGFLKEALIINDGILNPNKKDAKLHDGALFKTTDSGGSGRRSGGGSVGNEGLTRDFLGLKPPSHNDILSMAGIGNCISSSSSSSHQDQPIRQFQWQA 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele40g0271 474 Gene3D Classic Zinc Finger 128 212 - -
Lele40g0271 474 FunFam protein indeterminate-domain 12-like 54 123 - -
Lele40g0271 474 SUPERFAMILY beta-beta-alpha zinc fingers 74 172 IPR036236 -
Lele40g0271 474 SMART c2h2final6 75 97 IPR013087 -
Lele40g0271 474 SMART c2h2final6 117 147 IPR013087 -
Lele40g0271 474 SMART c2h2final6 152 172 IPR013087 -
Lele40g0271 474 Pfam Zinc-finger double-stranded RNA-binding 75 97 IPR022755 -
Lele40g0271 474 ProSitePatterns Zinc finger C2H2 type domain signature. 77 97 IPR013087 -
Lele40g0271 474 MobiDBLite consensus disorder prediction 455 474 - -
Lele40g0271 474 MobiDBLite consensus disorder prediction 407 435 - -
Lele40g0271 474 MobiDBLite consensus disorder prediction 267 298 - -
Lele40g0271 474 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 22 455 IPR031140 -
Lele40g0271 474 ProSiteProfiles Zinc finger C2H2 type domain profile. 75 97 IPR013087 -
Lele40g0271 474 MobiDBLite consensus disorder prediction 39 58 - -
Lele40g0271 474 FunFam protein indeterminate-domain 5, chloroplastic-like 130 209 - -
Lele40g0271 474 Gene3D Classic Zinc Finger 54 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele40g0271 Lele-ChrLele40 2174831 2177166 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele40g0271 8 459 IDZ Gene Family AT1G55110 47.292 2.96e-123 365
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele40g0271 zf-C2H2_jaz 6.8e-05 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele37g0303 37 2564413 2566743 Lele40g0271 40 2174831 2177166 hybridization
Lele38g0286 38 2274702 2277183 Lele40g0271 40 2174831 2177166 hybridization