Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele40g0258 ATGGAACCTCGAGTTGGAAACAAGTTCTTTCTCGGCCGGAAGATTGGTAGCGGGTCGTTTGGAGAGATCTACCTCGGTACTAATATTCAGACAAATGAAGAGGTTGCAATTAAGCTTGAAAATGTCAAGACCAAGCACCCCCAACTGTTGTATGAATCGAAGTTGTATAAAATACTTCAAGGAGGAACTGGAATACCAAACTTAAAATGGTTTGGAGTTGAAGGAGACTACAATGTGCTTGTAATGGATTTACTGGGGCCTAGTCTTGAAGATTTATTCAATTTTTGTAGTAGGAAGCTGTCCCTCAAAACTGTTCTGATGCTTGCTGATCAGATGATAAATCGAGTTGAATTTGTCCATTCTAAATCATTTTTACATCGTGACATCAAGCCAGACAACTTCCTCATGGGTTTAGGGAGGCGTGCTAATCAAGTGTACATCATTGACTTTGGTCTTGCTAAGAAATATAGAGACACTTCTACTCATCAGCATATTCCTTACAGAGAGAATAAGAATTTAACAGGAACTGCAAGATATGCTAGCATGAATACTCATCTTGGAATTGAACAAAGCCGTAGAGATGACTTAGAGTCACTTGGATACGTTCTTATGTATTTTCTGAGAGGAAGCCTTCCTTGGCAGGGACTGAAAGCCGGTACTAAGAAGCAAAAGTATGAAAAGATTAGTGAGAAGAAAGTTTCTACTTCTATTGAGGCCCTCTGCCGTGGTTATCCATCTGAATTTGCATCATACTTCCATTATTGTCGGTCACTTCGGTTTGATGATAAACCTGATTATGCTTATCTAAAGAGGCTTTTCCGTGACCTTTTTATTCGTGAAGGATTTCAGTTTGATTATGTCTTTGACTGGACCATATTGAAATATCAGCAATCTCAAATTGCCACTCCTCCTGCACGTGGTATTGGTCCTGGTGTTGGACCAAGTTCTGGCATGCCACCAGCAGTTGCAAATGCTGATAGACATTTAGGTGTTGAAGATGGTAGGCACACTGGTTGGACTTCATCAGATCCTACTCGGAGGAGAAACTCTGGACCTATTTCAAATGATGGCATTTTACCAAGACAAAAGGCCCCAGTTGCAAGTCACTTGACTGGTTCCAAAGATGTTACGCTGTCAAGCTCCCATCTCTTCCGGTCAAGTGGATCACAAAGGAGAGGTGCTGTTTCTGGCAGTCGTGATGCAATTGTTGGTGGTGAGACTGAACCCTCTCGCCCTCTTGCTGTGGATGCAAGTCCTGCAGCATTTCGTAAAGTCTCTGGTGCGCAAAGAGGTTCGCCTATTATATCATCAGAACAAAACCGAACTTCATCTGGAAGAAACATGTCAAATGTGAAGAATTTTGAGTCGACACTCAGAGGTATCGAGGGCCTGCATTTCAATGATGAGAGGGTGCAGTAA 1419 0.4214 MEPRVGNKFFLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTKHPQLLYESKLYKILQGGTGIPNLKWFGVEGDYNVLVMDLLGPSLEDLFNFCSRKLSLKTVLMLADQMINRVEFVHSKSFLHRDIKPDNFLMGLGRRANQVYIIDFGLAKKYRDTSTHQHIPYRENKNLTGTARYASMNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYEKISEKKVSTSIEALCRGYPSEFASYFHYCRSLRFDDKPDYAYLKRLFRDLFIREGFQFDYVFDWTILKYQQSQIATPPARGIGPGVGPSSGMPPAVANADRHLGVEDGRHTGWTSSDPTRRRNSGPISNDGILPRQKAPVASHLTGSKDVTLSSSHLFRSSGSQRRGAVSGSRDAIVGGETEPSRPLAVDASPAAFRKVSGAQRGSPIISSEQNRTSSGRNMSNVKNFESTLRGIEGLHFNDERVQ 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele40g0258 472 MobiDBLite consensus disorder prediction 430 449 - -
Lele40g0258 472 MobiDBLite consensus disorder prediction 372 394 - -
Lele40g0258 472 SUPERFAMILY Protein kinase-like (PK-like) 5 290 IPR011009 -
Lele40g0258 472 MobiDBLite consensus disorder prediction 305 324 - -
Lele40g0258 472 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Lele40g0258 472 Gene3D Transferase(Phosphotransferase) domain 1 1 306 - -
Lele40g0258 472 MobiDBLite consensus disorder prediction 426 449 - -
Lele40g0258 472 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Lele40g0258 472 FunFam Putative Casein kinase I 1 85 - -
Lele40g0258 472 FunFam Casein kinase I isoform delta-like 1 308 - -
Lele40g0258 472 SMART serkin_6 9 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele40g0258 472 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele40g0258 472 PANTHER CASEIN KINASE-RELATED 9 380 - -
Lele40g0258 472 Pfam Protein kinase domain 12 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele40g0258 472 MobiDBLite consensus disorder prediction 332 412 - -
Lele40g0258 472 CDD STKc_CK1_delta_epsilon 8 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele40g0258 Lele-ChrLele40 2049318 2052908 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele40g0258 7 223 EF-hand Containing Proteins AT2G17890 25.778 1.32e-12 67.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Lele40g0258 Pkinase 1.5e-27 CL0016