Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele40g0255 ATGGGAAATCAAAAGCATAAGTGGACCGCCGAGGAAGAAGAAGCTTTGCTCGCTGGCATTGCCAAGCATGGCCCCGGCAAGTGGAAGAATATCCTCAAAGATCCCGAATTTGCCCCCTTTCTCACTCACCGTTCCAACATCGATCTTAAGGATAAATGGCGAAATTTAAGTGTTAGTACTTCAGCTCAAGGATCTAAAGAAAAAGCTAGGAATCCAAAGATTAAAATTACGGAACCTGCTACACCTGCTGGCACGCAAAATGCTTCTGTTGCTCCTCTACTTCGTCAATGTGCAGCTTCTGATGCCGTCACAGATGATTCTCCTCACAATGTGCAGGATGTCAAACATGCTCCACAGTACGATGCAATGATTTTTGAAGCCCTATCAATGATAAGAGATTCCAATGGATCTGACCTAAATGCTATTGTTAACTTCATTGAGCAAAAGCATGAGGTTCCTCAAAATTTCAGACGAGCAGTAGGTGCAAGGTTGAGGAAGCTTGTTGATCAAGGAAAACTTGAAAAGTTACAAAACTTTTACAGAATAAAGAGAGCAACACCTCCGGAGACAAAACCACCTGCACCAAAACAAAACGATTCCAGGCCACGTCAATCACCAGCCTCTGGATTTACAGCATCTCATGAGACGGTAACAGATGCTGCGGAGATTGCGGCACACAGAATTGCTGAAGCAGAGCACAAATCACATTGGGCCGCTGAAGCAATCAAGGAGGCAGAAAAATTCTCAAAGTTGGCCGAAGATGCTGATGCAATGTTACAGCTAGCGAAAGAGATTTATGAGAAATGTTCACGGGGTGAAATCATGCTCTTGGCTTAA 837 0.4409 MGNQKHKWTAEEEEALLAGIAKHGPGKWKNILKDPEFAPFLTHRSNIDLKDKWRNLSVSTSAQGSKEKARNPKIKITEPATPAGTQNASVAPLLRQCAASDAVTDDSPHNVQDVKHAPQYDAMIFEALSMIRDSNGSDLNAIVNFIEQKHEVPQNFRRAVGARLRKLVDQGKLEKLQNFYRIKRATPPETKPPAPKQNDSRPRQSPASGFTASHETVTDAAEIAAHRIAEAEHKSHWAAEAIKEAEKFSKLAEDADAMLQLAKEIYEKCSRGEIMLLA 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele40g0255 278 SMART sant 4 59 IPR001005 -
Lele40g0255 278 MobiDBLite consensus disorder prediction 182 216 - -
Lele40g0255 278 FunFam Telomere repeat-binding factor 1 8 87 - -
Lele40g0255 278 PANTHER SINGLE MYB HISTONE 4 1 277 IPR044597 GO:0003691
Lele40g0255 278 FunFam Telomere repeat-binding factor 1 2 58 - -
Lele40g0255 278 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Lele40g0255 278 SUPERFAMILY "Winged helix" DNA-binding domain 116 196 IPR036390 -
Lele40g0255 278 ProSiteProfiles Myb-like domain profile. 1 57 IPR001005 -
Lele40g0255 278 SMART h15plus2 114 179 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lele40g0255 278 Gene3D - 113 198 IPR036388 -
Lele40g0255 278 SUPERFAMILY Homeodomain-like 2 58 IPR009057 -
Lele40g0255 278 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 116 184 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lele40g0255 278 Gene3D - 8 81 - -
Lele40g0255 278 Pfam Myb-like DNA-binding domain 6 56 IPR001005 -
Lele40g0255 278 MobiDBLite consensus disorder prediction 197 215 - -
Lele40g0255 278 CDD SANT_TRF 6 56 - -
Lele40g0255 278 Pfam linker histone H1 and H5 family 118 176 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele40g0255 Lele-ChrLele40 2028991 2031741 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele40g0255 1 277 Single Myb Histone (SMH) Gene Family AT1G17520 50.865 1.70e-88 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lele40g0255 Linker_histone 3.4e-10 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele37g0278 37 2355227 2356042 Lele40g0255 40 2028991 2031741 hybridization
Lele38g0269 38 2155089 2157738 Lele40g0255 40 2028991 2031741 hybridization