Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele40g0241 | ATGGACGCGCGAACAAATCATACTCCTCGCACTGTTGAAGAGGTTTTCAGGGATTTCAAGGGCCGAAGAGCTGGAGTTATTAAAGCCCTTACAACGGGTGCAGCATTGGTTATGACCAGTGAAAGGCTCAATTTGGAATTGGTACTATCTGATTGGAAGAGTCTTAGACGGCAGATGTTGGTCTTCTTCTGTTCTGTGCTGAGTGTGGCCGAACCAAACAATGTTCAAGATTTTTACAACCAATGTGACCCTGAGAAGGAGAATTTGTGCTTGTATGGACTTCCTAGTGAGCAATGGGAAGTGAACTTACCTGCTGAAGAAGTTCCTCCAGAGCTTCTTGAGCCTGTTCTGGGAATTAATTTTGCTAGGGATGGCATGCAAGAAAAAGACTGGCTATCTTTAGTTGCAGTCCATAGTGAAACATGGTTACTTTCCGTGGCCTTCTATTTTGGAGCCAGATTTGGGTTTGATAGAGCTGACAGGAAACGACTTTTCGGTATGATCAATGAACTGCCAACAATTTTTGAAGTTGTTACTGGCACAGCGAAGAAAGAAGTGAAGGAGAAGTCTTCAACTCATAGTGGCAGCAAATCTAAGTCTGGCTCTAAGGCGAGAGCTTCAGAAATTCAGGGTAGACAATCGAAGGTTTTTCAACCAAAAGATGAGGATGAAGTTCCAGACGAGCAAGATGAAGATGATGAACATGGGGATACCTTGTGCGGGGCATGCGGGGAGAATTATGGTACGGATGAGTTCTGGATTTGCTGTGACATCTGTGAGAAGTGGTTCCATGGCAAATGTGTGAAGATTACCCCTGCAAGGGCAGAGCATATCAAGCAATACAAATGCCCATCATGCAGTAACAAGAGAGTTCGGTGCTGA | 882 | 0.4467 | MDARTNHTPRTVEEVFRDFKGRRAGVIKALTTGAALVMTSERLNLELVLSDWKSLRRQMLVFFCSVLSVAEPNNVQDFYNQCDPEKENLCLYGLPSEQWEVNLPAEEVPPELLEPVLGINFARDGMQEKDWLSLVAVHSETWLLSVAFYFGARFGFDRADRKRLFGMINELPTIFEVVTGTAKKEVKEKSSTHSGSKSKSGSKARASEIQGRQSKVFQPKDEDEVPDEQDEDDEHGDTLCGACGENYGTDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRVRC | 293 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele40g0241 | 293 | ProSiteProfiles | Zinc finger PHD-type profile. | 237 | 289 | IPR019787 | - | |
| Lele40g0241 | 293 | FunFam | PHD finger alfin-like protein | 232 | 288 | - | - | |
| Lele40g0241 | 293 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 229 | 288 | IPR013083 | - | |
| Lele40g0241 | 293 | SMART | PHD_3 | 239 | 287 | IPR001965 | - | |
| Lele40g0241 | 293 | MobiDBLite | consensus disorder prediction | 186 | 234 | - | - | |
| Lele40g0241 | 293 | Pfam | PHD-finger | 240 | 289 | IPR019787 | - | |
| Lele40g0241 | 293 | MobiDBLite | consensus disorder prediction | 195 | 214 | - | - | |
| Lele40g0241 | 293 | CDD | PHD_AL_plant | 239 | 289 | IPR044104 | - | |
| Lele40g0241 | 293 | ProSitePatterns | Zinc finger PHD-type signature. | 240 | 286 | IPR019786 | - | |
| Lele40g0241 | 293 | PANTHER | CPG BINDING PROTEIN | 8 | 292 | IPR045104 | GO:0006355|GO:0042393 | |
| Lele40g0241 | 293 | Pfam | Alfin | 72 | 180 | IPR021998 | GO:0006355|GO:0042393 | |
| Lele40g0241 | 293 | SUPERFAMILY | FYVE/PHD zinc finger | 228 | 290 | IPR011011 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele40g0241 | Lele-ChrLele40 | 1899087 | 1902805 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lele40g0241 | 7 | 292 | Alfin-like Transcription Factor Family | AT3G42790 | 62.238 | 7.00e-113 | 324 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | Alfin-like | Lele40g0241 | Alfin | 1.4e-53 | No_clan |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Lele39g1164 | 39 | 20333245 | 20337273 | Lele40g0241 | 40 | 1899087 | 1902805 | ECH | |
| Lele40g0241 | 40 | 1899087 | 1902805 | Lele40g0241 | 40 | 1899087 | 1902805 | ECH | |
| Lele37g0261 | 37 | 2068189 | 2072223 | Lele40g0241 | 40 | 1899087 | 1902805 | hybridization | |
| Lele38g0257 | 38 | 2038943 | 2047771 | Lele40g0241 | 40 | 1899087 | 1902805 | hybridization |