Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele40g0238 ATGAAACTCCTGAGTCCACTCGGACGCACCAATTCTAATTTCATTTTGGGGGCCTCTGCTTCAAAGCGCTTTCGCTTTGCTTTTCCCTTCAAATCATACTCAAAGAGGTTTGAGTGGCTGATAATAAACATGAATTTGCAACAAGTTGGCCAGCCCAAATCTTTTAATGGATATGGCCGCCGAAAATCTGAAAGAGAAGGAGCATTTATGTCAGAGAATAAGATCCAGTCTGGAAAATCAAATGCCAGCAGATTAGCAATGACTGGCATTAAAGGTGATAATCATGAGAGTCCTTCATGTGATCGATTATTGTATATAGCAACTTGCCTCATTGGGCAGCAGGTGGAAGTCCATGTGAAAAGTGGATCTATATACTCTGGAATTTTCCATGCAGCAAATGCTGACAAAGATTTTGGAATCATTTTGAAAATGGCTCGCTTGATGAAGGATAGTTCTATTCGAGGGAAGAGGTCTGCTGTAGAATTCCTGAGCCAAGCTCCTTCAAAGACATTAATTATATCTGGCAAAGATCTTGTACAAATCATGGCAAAGGATGTTGCTGTTACTCGGGATGAACTTTGTAGTGAGGCTCATCATGAATTGCATCAGGAGATTATGGTTGATTCAGCAATATCTCAATCTCGTCATGTCGAGATGGAGAGAGAACTATTACCCTGGGTACCTGATGGAGATCATTCACAATGCCCTGAACTGGAAAATATATTTGATGGCCCTTGGAATAGATGGGATCAATTTGAAATAAATGAAGCATTGTTCGGTGTAAAAAGCACATTCAATGAGGAATTATATACAACAAAGCTTGAAAAAGGGCCTCATATGAGAGAGTTGGAAAAACAAGCTTTAAGAATAGCAAGAGAAATTGAGGGTGAGGAGACCCGAGATCTTCATTTAGCAGAGGAAAGAGGTATAAACCTACATGAAGACTTTGATATTGATGAAGAGACCAGATTCTCATCAGTCTACAGGGATAAAGGGGTTGATGACAGTGGACATGATGAAAGAGAAGATATACAAATAGATTCCCGGAATTCTGAAACATTTGGTGGTACGTTTACTCCAGTCGTCAAGAAATCCAGTGATTTAGCCAGTGGAGAAGGCAATGGTGGAGCTCAATTATCATCAGATTCCTCCGTTATGGATCTCCCTCATTCATCTCAGTCAAATATTGGAATGGATGTAAGCCACTCTAGTACTTATGATCCTGCCAAAGAATTAGCATCTGAACTCCCTACCAAAAGTTCCACATCTTTGGATGGAGAAAGGGTTCAGGATTCAATTGTTGATCAACACGGAGCAAATGACAGTAGCAAGGAAGAAAATCAGGCTGAGGATGGTCAACCGTCAAAATCTGAGGATTCACAGTCATTGCTCAACTTGAAGAAAGATGGCTCTGATAAAGGGGAATTAAATGCCTCCTCTTTTGCCCCTTCGGCTCATGTTTTATTAAGTACTCAAGAAAAGGCAGGGTCTCCTGGAGATATGGTTGAGAGTTCAGCTTCAGGCAAAGTGAATGGGGATACAAAGTCTGAGAACTCCCATGGAAGACCAGGTAGTTCTGCTTCATCTGCTGCAGAGCCTGTGGGAGGTTTGACAGCATCTTCTCGTCCTGGCCTATCGCCAAGTTCTTCAGTTGGTTCATTATCTTCTGAAAGATCAACTCTGAATCCCGATGCAAAGGAATTCAAGCTCAACCCAAATGCAAGGAGTTTCATTCCATCTCAAACATCTAGACCTCCCTCCCCAGCGTCTGATGCTTCATTCTATTTCCCAACAAATGTAACTAGTGTGCCGCATATGCCAACCATGCCCGTTGGTGTTGGGATGGGACCTACATTTACGGGGCCACAACAGGCCATATATAATCCACAGCTTACACAAGTGCCATTGACATATTTTCATCCAAATGGACCACAGTACGGGCAGCTTGTTGGTCATCCCAGGCAAGTCATGTACATGCCGCCAGGATACATACCCGAAACGCAGTATAGGGGACGGGAGTATTAG 2025 0.4257 MKLLSPLGRTNSNFILGASASKRFRFAFPFKSYSKRFEWLIINMNLQQVGQPKSFNGYGRRKSEREGAFMSENKIQSGKSNASRLAMTGIKGDNHESPSCDRLLYIATCLIGQQVEVHVKSGSIYSGIFHAANADKDFGIILKMARLMKDSSIRGKRSAVEFLSQAPSKTLIISGKDLVQIMAKDVAVTRDELCSEAHHELHQEIMVDSAISQSRHVEMERELLPWVPDGDHSQCPELENIFDGPWNRWDQFEINEALFGVKSTFNEELYTTKLEKGPHMRELEKQALRIAREIEGEETRDLHLAEERGINLHEDFDIDEETRFSSVYRDKGVDDSGHDEREDIQIDSRNSETFGGTFTPVVKKSSDLASGEGNGGAQLSSDSSVMDLPHSSQSNIGMDVSHSSTYDPAKELASELPTKSSTSLDGERVQDSIVDQHGANDSSKEENQAEDGQPSKSEDSQSLLNLKKDGSDKGELNASSFAPSAHVLLSTQEKAGSPGDMVESSASGKVNGDTKSENSHGRPGSSASSAAEPVGGLTASSRPGLSPSSSVGSLSSERSTLNPDAKEFKLNPNARSFIPSQTSRPPSPASDASFYFPTNVTSVPHMPTMPVGVGMGPTFTGPQQAIYNPQLTQVPLTYFHPNGPQYGQLVGHPRQVMYMPPGYIPETQYRGREY 674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele40g0238 674 MobiDBLite consensus disorder prediction 329 591 - -
Lele40g0238 674 Pfam Ataxin 2 SM domain 101 184 IPR025852 -
Lele40g0238 674 Gene3D - 108 185 - -
Lele40g0238 674 MobiDBLite consensus disorder prediction 507 561 - -
Lele40g0238 674 MobiDBLite consensus disorder prediction 371 402 - -
Lele40g0238 674 MobiDBLite consensus disorder prediction 430 453 - -
Lele40g0238 674 MobiDBLite consensus disorder prediction 415 429 - -
Lele40g0238 674 MobiDBLite consensus disorder prediction 349 364 - -
Lele40g0238 674 SMART LsmAD_2 259 330 IPR009604 -
Lele40g0238 674 MobiDBLite consensus disorder prediction 574 591 - -
Lele40g0238 674 MobiDBLite consensus disorder prediction 329 348 - -
Lele40g0238 674 Coils Coil 280 300 - -
Lele40g0238 674 PANTHER ATAXIN 2-RELATED 76 664 IPR045117 GO:0003723
Lele40g0238 674 Pfam LsmAD domain 259 329 IPR009604 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele40g0238 Lele-ChrLele40 1888411 1894075 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele40g0238 40 1888411 1894075 Lele40g0238 40 1888411 1894075 ECH
Lele37g0260 37 2063322 2066857 Lele40g0238 40 1888411 1894075 hybridization
Lele38g0255 38 2026165 2030916 Lele40g0238 40 1888411 1894075 hybridization