Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele40g0235 ATGTTAACCTGCATAGCTTGTTCCAAGCAGCTTAATGACAAGAGATCTCTTCCTCAACAAGATGAGCACGAAGAAGCTGTGGATACACCCAGCACCAAGCAGGCCATTAAGGCCCTCACCGCTCAGATCAAGGACATGGCAGTGAAGGCTTCTGGGGCGTATAAAAATTGCAAGCCTTGTTCAGGATCTTCGAATGGTAACAGGAATCAGAACTGTGTTGATTCTGATATGGCTTCAGAATCAGCGAGATTTCACTGGGCGTACAAAAGGGCTGGGAGCTCAAACTCAACCCCAAGGCTTTGGGGAAAGGAGATGGAGGCGAGACTGAAAGGACTCTCTAGCGGGGAAGGAACTCCGGCGTCGGTGAGTGGCCGGACTGAGTCGGTGGTGTTCATGGAGGAGGATGAGCCCAAAGAATGGGTTGCTCAAGTAGAACCTGGTGTACTTATCACCTTTGTTTCATTGCCTCAAGGTGGGAATGATCTGAAACGAATACGGTTCAGCCGGGAGATGTTTAATAAATGGCAAGCGCAAAGGTGGTGGGCTGAGAATTATGACAAGGTCATGGAGTTGTACAATGTTCAAAGGTTCAATGAACAAGTTGGTCCACCGCCAACCCCACCGAGATCGGAAGATGAGAGCTCGAAGATTGAATCTGTTAGGGACAGCCCTGTCACGCCTCCTCTTAACAAAGAGCGTCCACCTCATCATCTTCTCCACCGTCAAATGGGAATGGGATACTCCTCATCGGATTCACTGGATCATCACCACGCGATGCAACCACAACGGCCATGCTATGAAACGAGCGGCTTAGCTTCAACACCTAAGCTTTCTAGCATCAGCGGGGCAAGGACCGAAACATCATCCTTAGACGGTTCTGTGAGGACTAGTTCATCAAGAGAGAGAGATCAGTCAGGCGAGCTTTCGCTCAGCAATGCCAGTGATATGGAGACTGAATGGGTTGAACAGGATGAACCAGGAGTATACATCACCATCAGAGCACTTCCAGGGGGAACCAAAGAACTCAGGCGCGTCCGGTTCAGCCGAGAAAGGTTTGGAGAAATGCACGCGAGGTTGTGGTGGGAGGAGAACCGGGCGAGGATACAGGAGCAATATTTGTGA 1122 0.5018 MLTCIACSKQLNDKRSLPQQDEHEEAVDTPSTKQAIKALTAQIKDMAVKASGAYKNCKPCSGSSNGNRNQNCVDSDMASESARFHWAYKRAGSSNSTPRLWGKEMEARLKGLSSGEGTPASVSGRTESVVFMEEDEPKEWVAQVEPGVLITFVSLPQGGNDLKRIRFSREMFNKWQAQRWWAENYDKVMELYNVQRFNEQVGPPPTPPRSEDESSKIESVRDSPVTPPLNKERPPHHLLHRQMGMGYSSSDSLDHHHAMQPQRPCYETSGLASTPKLSSISGARTETSSLDGSVRTSSSRERDQSGELSLSNASDMETEWVEQDEPGVYITIRALPGGTKELRRVRFSRERFGEMHARLWWEENRARIQEQYL 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele40g0235 373 MobiDBLite consensus disorder prediction 266 295 - -
Lele40g0235 373 Pfam Transcription factor BRX N-terminal domain 24 60 IPR027988 -
Lele40g0235 373 MobiDBLite consensus disorder prediction 198 316 - -
Lele40g0235 373 PANTHER PROTEIN BREVIS RADIX-LIKE 1 1 373 IPR044532 -
Lele40g0235 373 Pfam Transcription factor regulating root and shoot growth via Pin3 138 192 IPR013591 -
Lele40g0235 373 Pfam Transcription factor regulating root and shoot growth via Pin3 317 372 IPR013591 -
Lele40g0235 373 ProSiteProfiles BRX domain profile. 138 193 IPR013591 -
Lele40g0235 373 ProSiteProfiles BRX domain profile. 318 373 IPR013591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele40g0235 Lele-ChrLele40 1859348 1862349 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele40g0235 1 373 Major Intrinsic Protein MIP AT1G31880 47.301 7.34e-102 303
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele40g0235 40 1859348 1862349 Lele40g0235 40 1859348 1862349 ECH
Lele37g0251 37 1995231 1998335 Lele40g0235 40 1859348 1862349 hybridization
Lele38g0251 38 1991450 1994474 Lele40g0235 40 1859348 1862349 hybridization