Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele40g0230 ATGCGAAACGCTCAGTTTTCTTCAGAGTTCGCAGAAGCTTATCAACATGGCGACCCAAATGAGCAAAAAGCGAAAGCTTGTGCTCCTCAGTTTGTAGCCGATGGAGTTTTCTTTGCGGAGCTGAATGAGGTTTTGACTAGGGAGCTTGCAGAGGATGGGTACTCTGGTGTTGAAGTTAGGGTTACCCCCATGAGGACCGAGATCATCATTAGGGCGACTCGCACTCAGAACGTTCTCGGTGAAAAGGGAAGAAGAATTAGGGAACTGACATCTATTGTTCAGAAGCGTTTCAAGTTTCCTGAGAACAGTGTTGAGCTATATGCTGAGAAAGTCAACAACAGAGGGCTCTGTGCTATTGCACAGGCAGAGTCTCTGCGTTACAAGCTTCTTGGAGGGCTTGCTGTCAGAAGGGCTTGCTATGGTGTCCTTAGGTTTGTCATGGAAAGTGGTGCCAAAGGTTGTGAGGTTATTGTTAGTGGCAAGCTCAGGGCTCAGCGAGCCAAATCTATGAAATTCAAGGACGGATACATGATATCATCCGGTCAGCCCGTCAAGGAATATATAGACTCTGCTGTGAGGCATGTGCTTTTGAGACAGGGTGTTCTTGGTATCAAGGTGAAAATCATGCTTGATTGGGATCCTAAGGGCAAGCAAGGACCAACTAAACCTATTCCGGATGTTGTCACAATCCATCCACCAAAGGAAGAAGAAGATTACATTACCAGGCCCTTGCAACAGCCCGCAGTGCCCGCCAACATAGAGATTGCAGCTGTCTAG 777 0.4749 MRNAQFSSEFAEAYQHGDPNEQKAKACAPQFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSIVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKEYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPTKPIPDVVTIHPPKEEEDYITRPLQQPAVPANIEIAAV 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele40g0230 258 CDD 40S_S3_KH 35 115 - -
Lele40g0230 258 SUPERFAMILY Ribosomal protein S3 C-terminal domain 113 211 IPR036419 -
Lele40g0230 258 ProSitePatterns Ribosomal protein S3 signature. 167 203 IPR018280 -
Lele40g0230 258 SUPERFAMILY Prokaryotic type KH domain (KH-domain type II) 30 119 IPR009019 GO:0003723
Lele40g0230 258 FunFam 40S ribosomal protein S3 22 112 - -
Lele40g0230 258 Gene3D - 22 111 IPR015946 -
Lele40g0230 258 TIGRFAM uS3_euk_arch: ribosomal protein uS3 30 230 IPR005703 GO:0003735|GO:0006412|GO:0015935
Lele40g0230 258 Gene3D - 113 239 IPR036419 -
Lele40g0230 258 PANTHER 30S/40S RIBOSOMAL PROTEIN S3 29 218 - -
Lele40g0230 258 Pfam Ribosomal protein S3, C-terminal domain 126 208 IPR001351 GO:0003735|GO:0006412
Lele40g0230 258 Pfam KH domain 40 113 IPR004044 GO:0003723
Lele40g0230 258 FunFam 40S ribosomal protein S3 113 248 - -
Lele40g0230 258 ProSiteProfiles Type-2 KH domain profile. 41 112 IPR004044 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele40g0230 Lele-ChrLele40 1815104 1817128 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele40g0230 30 240 Cytoplasmic Ribosomal Protein Gene Family AT5G35530 90.995 4.15e-144 402