Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele40g0228 ATGGGAAGGAGCCCTTGCTGTGCGAAGGAAGGTTTGAATAGAGGAGCGTGGACTGCTATAGAAGACAAGATTCTCATTGACTACATTAAGATTCACGGCGAAGGAAAATGGAGACACCTTCCCAAAAGAGCAGGTCTGAAGAGATGTGGAAAGAGTTGTAGGCTGAGATGGTTAAATTATCTGAGACCTGACATCAAAAGAGGAAATATTACTCATGATGAAGAGGATCTCATTATCAGGCTTCACAAACTTCTCGGAAACAGGTGGTCTTTGATAGCTGGACGACTACCAGGACGAACAGACAATGAAATAAAGAATTATTGGAACACAAACATCGGAAAGAAGCTTCAAAATGGAAACTCAAAAACGAAGTCGTCTCCTACATCAAGCGGCTCGCCAAGCCAAGGCAGACAGGACAAGATATCATCAGACTCAGATTCGGAACTAAAAGCCCCACAAAAACCGACCGGCGCCGGTCCATGCCACCTGGTTCGAACCAAAGCAACAAGGTGCACCAAAGTGATATTGGCTGCTGAGTAA 540 0.45 MGRSPCCAKEGLNRGAWTAIEDKILIDYIKIHGEGKWRHLPKRAGLKRCGKSCRLRWLNYLRPDIKRGNITHDEEDLIIRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNTNIGKKLQNGNSKTKSSPTSSGSPSQGRQDKISSDSDSELKAPQKPTGAGPCHLVRTKATRCTKVILAAE 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele40g0228 179 MobiDBLite consensus disorder prediction 115 140 - -
Lele40g0228 179 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lele40g0228 179 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Lele40g0228 179 MobiDBLite consensus disorder prediction 115 162 - -
Lele40g0228 179 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lele40g0228 179 Gene3D - 7 67 - -
Lele40g0228 179 FunFam MYB-related transcription factor 13 66 - -
Lele40g0228 179 SMART sant 13 63 IPR001005 -
Lele40g0228 179 SMART sant 66 114 IPR001005 -
Lele40g0228 179 CDD SANT 71 112 IPR001005 -
Lele40g0228 179 FunFam Transcription factor TT2 70 141 - -
Lele40g0228 179 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 140 - -
Lele40g0228 179 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lele40g0228 179 Gene3D - 69 143 - -
Lele40g0228 179 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lele40g0228 179 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Lele40g0228 179 CDD SANT 16 61 IPR001005 -
Lele40g0228 179 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele40g0228 Lele-ChrLele40 1797899 1800381 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele40g0228 1 116 MYB Transcription Factor Family AT2G16720 75.862 8.99e-64 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele40g0228 Myb_DNA-binding 2.2e-14 CL0123