Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele40g0224 ATGGCTTCTGAGACCGATAGTTTTATTAAAAGGAAAGTGAAGAGAGTTGACAAAGCCATGACAAATGTACCTCTTAGTAAAGCAGCATGGACACCAGAAGAAGATAGGAAACTAGCTGAGGTTATTGCAGTTCATGGGGCAAAAAGATGGAAGTCAATTGCATCCAAAGCAGGTCTTAATCGGTGTGGTAAGAGTTGCAGGCTGAGATGGTTGAACTATCTCAGACCCAACATTAAGAGGGGAAACATATCAGACCAAGAAGAGGATTTGATTCTTCGGCTTCATAAACTCCTAGGAAACAGGTGGTCCTTAATCGCTGGGAGACTACCAGGGCGAACAGATAATGAGATAAAGAACTATTGGAATTCTCATTTGTGCAAGAAGATAAAGCAGAAGGAGAAGCACTCGAGTGAGAGTTCAACCAGAGATCAAGAGAAACAAGAGGTGGCGATAGAGAAGAAGGTTCCAGAAGAAGCTGAGGTAATCAGAGAAGAGATTTCCACTGAGGAAACTGAAGACTCATCATCAAAACCCAGTTTTGATGTGGATGAGTTCTTTGATTTTTCTGTAGAAGAGGAAGGTCCATTGAATCTGGAGTGGGTTAGCCAGTTCCTTGAACTTGATGAAACAAATATTGGACTCTTCTCATAA 651 0.4163 MASETDSFIKRKVKRVDKAMTNVPLSKAAWTPEEDRKLAEVIAVHGAKRWKSIASKAGLNRCGKSCRLRWLNYLRPNIKRGNISDQEEDLILRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSHLCKKIKQKEKHSSESSTRDQEKQEVAIEKKVPEEAEVIREEISTEETEDSSSKPSFDVDEFFDFSVEEEGPLNLEWVSQFLELDETNIGLFS 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele40g0224 216 MobiDBLite consensus disorder prediction 132 180 - -
Lele40g0224 216 ProSiteProfiles Myb-like domain profile. 22 74 IPR001005 -
Lele40g0224 216 ProSiteProfiles Myb-like domain profile. 75 125 IPR001005 -
Lele40g0224 216 Gene3D - 28 79 - -
Lele40g0224 216 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 21 171 - -
Lele40g0224 216 FunFam Transcription factor TT2 83 155 - -
Lele40g0224 216 CDD SANT 84 125 IPR001005 -
Lele40g0224 216 SMART sant 26 76 IPR001005 -
Lele40g0224 216 SMART sant 79 127 IPR001005 -
Lele40g0224 216 Pfam Myb-like DNA-binding domain 29 74 IPR001005 -
Lele40g0224 216 Pfam Myb-like DNA-binding domain 80 125 IPR001005 -
Lele40g0224 216 FunFam MYB-related transcription factor 26 79 - -
Lele40g0224 216 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 22 78 IPR017930 -
Lele40g0224 216 Gene3D - 83 157 - -
Lele40g0224 216 CDD SANT 29 74 IPR001005 -
Lele40g0224 216 SUPERFAMILY Homeodomain-like 25 121 IPR009057 -
Lele40g0224 216 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 79 129 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele40g0224 Lele-ChrLele40 1748543 1749440 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele40g0224 14 175 MYB Transcription Factor Family AT3G13540 49.701 7.54e-52 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele40g0224 Myb_DNA-binding 4.3e-18 CL0123