Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele40g0223 ATGAGCGATTGGATGGGGTTTTCTCTGACTCCACACTTGAGGATTGATGAAGTGTATGGGAATGACAGAGGAAACCAAGAAGAACACCGTGGAGGTTATCCTCCTTCTCATCCTCGCTTGTCGGTTATGCCTTTAAGATCAGATGGCTCTCTGTGTGTTGCCGACCCTTTTAGGCGCTCTGGTGCAGCTGAAGAATGGAGATATGATAATGGAGTAGCAGGAGGAAGCTCCAATGAAGAAGGTCCAAAGCTTGAAGATTTCTTGGGTTGTTACTCAAACTCCTCTGATATTGCTGAAACCAAAGTGTATTGCCAAGGCAGTACACAACAACCAAACCAAGACCAGAACCAGAACCAGGACAACATTTCCAGCAGAATCAATGTGAATGTGGCCCCAAGCTTCAGCATCAACACTGAGATAGAAGCTAATGGGGAAAATTTCACAAACCCTCCTTCCTTAATCCAATCTTTTCATGCATACAATGATGGTAACCAGCGAGCTGTAATCCCAAATAATGGCATGTACAAGTCCTGGTTGGCTCAATCTCAATCTTCTGCTGAAGCGAATGGCTATAACTACCAATCTCTAGCCCTAACTATGAGTCCTAGTGTACCAAATCCTCTCTGTGGTGCAATTTCCCCGGTTCAAGTTGAAGATGATGCTCGTAAAAGGTCAATGACAAAATCTCTTGCTTCTCGAGAACCTGTGCCTCGCAAATCTATTGATACCTTTGGTCAAAGAACATCTCAGTATAGAGGGGTTACAAGGCATAGATGGACTGGGAGATATGAGGCCCATTTGTGGGATAATAGTTGCAGGAAGGAAGGGCAAACAAGGAAAGGAAGACAAGGTGGTTATGATAAGGAAGAAAAAGCAGCAAGAGCTTATGATTTAGCTGCGCTCAAGTATTGGGGTCCAACTACTCACATAAATTTCCCTTTAAGTACATACGAGAAGGAACTTGAAGAGATGAAGCACATGACTAGGCAAGAATTTGTGGCCAATTTGAGAAGGAAGAGTAGTGGATTTTCAAGAGGTGCTTCTGTGTATAGGGGCGTGACAAGACACCATCAACATGGAAGGTGGCAAGCTAGGATTGGCAGAGTTGCAGGAAACAAAGACTTGTATCTCGGTACATTTAGCACACAAGAGGAAGCTGCAGAAGCATACGATATTGCAGCGATAAAGTTCAGGGGAACTAGTGCTGTGACCAACTTCGATATAAGCCGGTATGACGTGAAGAGGATATGCTCGAGCTCCACTCTCATTGCGGGAGATCTGGCAAAGAAGTCTCCTGAAGAGTTAGCTCCAGCTCCCGGTGTCGCCACCGCCACGACCGACGACTTCAATTCTAATGCATCGTCGTTGGCGGTGACAACGGCTCATCAGCAACAGCCACAGACGTTTTTGGCTGTAACAAATGGGGAGCACTCTTCGGATGAGTTGGGCAACATGGTTTGGAATGATGACGGGAACCCCAACGAGAAACAGGTGAGTGATCAGAGTAATTCGGACAACAGCAAGAATAATAACAATGCTAAGAATGCTTCGAACTCAGAAGAAGGTGCCAAGTGTTCTGAGGGAATGGGGAACGAGTTTGGGGTGACTGATTCAGGGTTTGGAGGTGGGTTCTTCTCGTTGCAGGGACCAAAGTATAATGCTGATGACGATGATGATGGGAACAACGACAACAACGGTAATGATAGGTTGAATAATAACAATCCCATTGGGAACATGGGACTGGTTCATCAAGTTCCCATGTTTGCTTTGTGGAATGAATGA 1782 0.4545 MSDWMGFSLTPHLRIDEVYGNDRGNQEEHRGGYPPSHPRLSVMPLRSDGSLCVADPFRRSGAAEEWRYDNGVAGGSSNEEGPKLEDFLGCYSNSSDIAETKVYCQGSTQQPNQDQNQNQDNISSRINVNVAPSFSINTEIEANGENFTNPPSLIQSFHAYNDGNQRAVIPNNGMYKSWLAQSQSSAEANGYNYQSLALTMSPSVPNPLCGAISPVQVEDDARKRSMTKSLASREPVPRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCRKEGQTRKGRQGGYDKEEKAARAYDLAALKYWGPTTHINFPLSTYEKELEEMKHMTRQEFVANLRRKSSGFSRGASVYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGTSAVTNFDISRYDVKRICSSSTLIAGDLAKKSPEELAPAPGVATATTDDFNSNASSLAVTTAHQQQPQTFLAVTNGEHSSDELGNMVWNDDGNPNEKQVSDQSNSDNSKNNNNAKNASNSEEGAKCSEGMGNEFGVTDSGFGGGFFSLQGPKYNADDDDDGNNDNNGNDRLNNNNPIGNMGLVHQVPMFALWNE 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele40g0223 593 Pfam AP2 domain 348 399 IPR001471 GO:0003700|GO:0006355
Lele40g0223 593 Pfam AP2 domain 250 305 IPR001471 GO:0003700|GO:0006355
Lele40g0223 593 ProSiteProfiles AP2/ERF domain profile. 250 313 IPR001471 GO:0003700|GO:0006355
Lele40g0223 593 MobiDBLite consensus disorder prediction 476 530 - -
Lele40g0223 593 PRINTS Ethylene responsive element binding protein signature 251 262 IPR001471 GO:0003700|GO:0006355
Lele40g0223 593 PRINTS Ethylene responsive element binding protein signature 389 409 IPR001471 GO:0003700|GO:0006355
Lele40g0223 593 CDD AP2 249 315 IPR001471 GO:0003700|GO:0006355
Lele40g0223 593 MobiDBLite consensus disorder prediction 546 577 - -
Lele40g0223 593 CDD AP2 348 409 IPR001471 GO:0003700|GO:0006355
Lele40g0223 593 SUPERFAMILY DNA-binding domain 348 409 IPR016177 GO:0003677
Lele40g0223 593 SUPERFAMILY DNA-binding domain 249 315 IPR016177 GO:0003677
Lele40g0223 593 SMART rav1_2 349 413 IPR001471 GO:0003700|GO:0006355
Lele40g0223 593 SMART rav1_2 250 319 IPR001471 GO:0003700|GO:0006355
Lele40g0223 593 MobiDBLite consensus disorder prediction 22 41 - -
Lele40g0223 593 ProSiteProfiles AP2/ERF domain profile. 349 407 IPR001471 GO:0003700|GO:0006355
Lele40g0223 593 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 78 501 - -
Lele40g0223 593 MobiDBLite consensus disorder prediction 490 524 - -
Lele40g0223 593 FunFam AP2-like ethylene-responsive transcription factor 348 409 - -
Lele40g0223 593 FunFam AP2-like ethylene-responsive transcription factor ANT 249 315 - -
Lele40g0223 593 Gene3D AP2/ERF domain 349 409 IPR036955 GO:0003700|GO:0006355
Lele40g0223 593 Gene3D AP2/ERF domain 249 315 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele40g0223 Lele-ChrLele40 1736012 1739389 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele40g0223 1 432 AP2-EREBP Transcription Factor Family AT1G72570 51.502 3.41e-136 401
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Lele40g0223 AP2 1.2e-09 CL0081