Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele40g0212 ATGAAAGCTCTGCTCCTAAGTAAACCTGCTCCCCACTTCAATTTTTCTTTCAAACATACACATTCTTCTTCACCTCTTTTCACTTTTCCTACTCAATCTCTTCACCTCCAACCAACCAAGACCACTTTATTCACCTTCTGCGCCATTCAAAATCAAGGACAGCAAATTTTCCAGGACACGCCTGCTTCCATCGACAACCACGATGAATCCTACGGCGAAGTTAAAGGTATTATCGGAAGCAGAACCCTTGAAGGCGGCGCTGGCATGGAGTATTTGATCGAATGGAAAGATGGCCATGACCCCTCCTGGGTGCCCTCCGATTTTATCGCCAAAGACGTGGTGGCCGAGTACGAAACCCCGTGGTGGACCGCCGCCAAGAAAGCCGACGAATCCGCTCTCAAGCAGCTCATTGACTCCGACGACGGCAGGAACATCGACGCGGTCGACAGCGATGGGCGAACTGCGCTCCTCTTCGTATCGGGTCTGGGGTCGGAGCCGTGTGTGAGGGCGCTGGCTGAAGCGGCCACAAATCTGGATCATCGAGATAATTCGGGGGGCCTGACGGCGCTTCACATGGCTGCCGGATACGTGAGGCCTGGCGTGGTTAAGCTTCTGGTAGATCTGGGGGCGGATGTTGAGGCGAAAGACGACAGGGGACGGACGCCGTTAGAGCTAGCGAAGGAAATTCTGAACGCAACACCGAAAGGGAACCCGATGCAGTTCGGGAGGAGGATAGGGTTGGAGAGCGTGATAACGTCTCTGGAGGGAGCAATATACGAGTACGCAGAGGTGGAGGGGATATTGGAGGGGAGAGGGAAGGGGGAGAACTTGGAGTATTTGGTGAAATGGAAAGACGAAGGAGAGAACGAGTGGGTGAAGGCCAAGTTTGTCGGAGAAGATGTGGTGAGAGATTACGAAGCCGGACTGGAGTACGCGGTGGCGGAGAGAGTGATGGGAAGAAGAGACGGCGACGATGGGAAACCAGAGTTTCTGGTACAATGGACCGACATGGAGCAGCCCACATGGGAGCCCGAAGAGAATGTGGATCCTCAGCTCATACTGAAATTTGAACAGGCCCAAAATACTAGCCCAAAGTGA 1098 0.5355 MKALLLSKPAPHFNFSFKHTHSSSPLFTFPTQSLHLQPTKTTLFTFCAIQNQGQQIFQDTPASIDNHDESYGEVKGIIGSRTLEGGAGMEYLIEWKDGHDPSWVPSDFIAKDVVAEYETPWWTAAKKADESALKQLIDSDDGRNIDAVDSDGRTALLFVSGLGSEPCVRALAEAATNLDHRDNSGGLTALHMAAGYVRPGVVKLLVDLGADVEAKDDRGRTPLELAKEILNATPKGNPMQFGRRIGLESVITSLEGAIYEYAEVEGILEGRGKGENLEYLVKWKDEGENEWVKAKFVGEDVVRDYEAGLEYAVAERVMGRRDGDDGKPEFLVQWTDMEQPTWEPEENVDPQLILKFEQAQNTSPK 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele40g0212 365 Gene3D - 116 257 IPR036770 -
Lele40g0212 365 ProSiteProfiles Chromo and chromo shadow domain profile. 262 291 IPR000953 -
Lele40g0212 365 ProSiteProfiles Chromo and chromo shadow domain profile. 312 365 IPR000953 -
Lele40g0212 365 PANTHER MYOTROPHIN 96 286 - -
Lele40g0212 365 SMART chromo_7 311 361 IPR000953 -
Lele40g0212 365 SMART chromo_7 70 122 IPR000953 -
Lele40g0212 365 SMART chromo_7 260 310 IPR000953 -
Lele40g0212 365 SUPERFAMILY Chromo domain-like 68 121 IPR016197 -
Lele40g0212 365 SMART ANK_2a 185 214 IPR002110 GO:0005515
Lele40g0212 365 SMART ANK_2a 151 180 IPR002110 GO:0005515
Lele40g0212 365 SMART ANK_2a 116 147 IPR002110 GO:0005515
Lele40g0212 365 CDD CD2_cpSRP43_like 70 119 - -
Lele40g0212 365 SUPERFAMILY Chromo domain-like 260 307 IPR016197 -
Lele40g0212 365 ProSiteProfiles Ankyrin repeat region circular profile. 185 217 - -
Lele40g0212 365 CDD CD3_cpSRP43_like 309 357 - -
Lele40g0212 365 Pfam Chromo (CHRromatin Organisation MOdifier) domain 314 358 IPR023780 -
Lele40g0212 365 Pfam Ankyrin repeats (many copies) 179 226 IPR002110 GO:0005515
Lele40g0212 365 Gene3D - 308 360 - -
Lele40g0212 365 Gene3D - 258 307 - -
Lele40g0212 365 Gene3D - 68 115 - -
Lele40g0212 365 ProSiteProfiles Ankyrin repeat profile. 185 217 IPR002110 GO:0005515
Lele40g0212 365 SUPERFAMILY Chromo domain-like 310 359 IPR016197 -
Lele40g0212 365 SUPERFAMILY Ankyrin repeat 116 228 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele40g0212 Lele-ChrLele40 1641478 1642575 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele40g0212 139 226 CAMTA Transcription Factor Family AT5G09410 35.106 9.39e-07 48.9