Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele40g0206 ATGTCGACTTTTTCTGATGCGGCGGCGGATAGCCAGAAGGCTGGCAAGCAGGCGGAGAGGTCCAATTTCTCCCACACTTGTAATCTCTTAAGCCAGTTCTTGAAGGAGAAGCGTAGTTCTGGTGCTCTGAGCCTTGGAATGTGCGGGAAAATTGAACCCAGAGGAAATCCAACTACTACGATGGACTTGTTAACTTCCCTAGAAAAATCTGGTGATACCTCGAAACAAAGTCCTTCAGCTATGGATTTTCTTCCCCAGCTTGTACAAAACCAGTCTATTATTAGGTCACAGACCATGGCAGAGCCTAAAACTCCCCAAATGGCAATATTTTACTCCGGGAAGGTGTTGATGTTCGACGAATTTCCGCCAGAGAAGGCGACTGAGATCATGGAGCTAGCCACAAAGCTAAGCTCTGATAATTCTGGGGTCAGCAAAAACACCCCAAATGCTTCTGTAGCTCTTGAAAACCTCAACGACGTTAAGGTGCCTCAAACAAGCACATCCCAAGAAGCTTCTCGTCCAGCCTCTATCGCTTTTGGTCCAGATATAAGGTACCCGAGGAGAGCTTCGCTTTTAAAATTTCTGGAGAAAAGAAAAGAAAGGGTAATTGCAAGAGGACCATATCATATGAACCCTAAGCATGAAGGAGGCAGATCTAGAGGCCACACTGAAGAGCAATCTTGCAAATCCTTTGACCTTAACTTATAG 708 0.4562 MSTFSDAAADSQKAGKQAERSNFSHTCNLLSQFLKEKRSSGALSLGMCGKIEPRGNPTTTMDLLTSLEKSGDTSKQSPSAMDFLPQLVQNQSIIRSQTMAEPKTPQMAIFYSGKVLMFDEFPPEKATEIMELATKLSSDNSGVSKNTPNASVALENLNDVKVPQTSTSQEASRPASIAFGPDIRYPRRASLLKFLEKRKERVIARGPYHMNPKHEGGRSRGHTEEQSCKSFDLNL 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele40g0206 235 Pfam tify domain 101 133 IPR010399 -
Lele40g0206 235 MobiDBLite consensus disorder prediction 206 235 - -
Lele40g0206 235 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 12 213 IPR040390 -
Lele40g0206 235 Pfam Jas motif 187 208 IPR018467 -
Lele40g0206 235 MobiDBLite consensus disorder prediction 1 21 - -
Lele40g0206 235 ProSiteProfiles Tify domain profile. 100 135 IPR010399 -
Lele40g0206 235 SMART tify_2 100 135 IPR010399 -
Lele40g0206 235 MobiDBLite consensus disorder prediction 206 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele40g0206 Lele-ChrLele40 1594679 1596077 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele40g0206 18 219 Tify Gene Family AT1G19180 32.618 1.81e-25 98.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Lele40g0206 tify 1.1e-12 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele40g0206 40 1594679 1596077 Lele40g0206 40 1594679 1596077 ECH
Lele37g0217 37 1686214 1687589 Lele40g0206 40 1594679 1596077 hybridization
Lele38g0218 38 1707192 1710672 Lele40g0206 40 1594679 1596077 hybridization