Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele40g0205 ATGCAGAACCCCAGGTTGAAGCAGCACCAGCAGCAAGCTCTGATGCAACAAGCTCTTATGCAACAACAGTCTCTCTACCACCCTGGCCTCTTAGCTGCTCCTCAGATTGAACCAATTCCAAGTGGAAATCTGCCTCCCGGTTTTGATCCAAGTTCTTGCCGCAGTGTGTATGTGGGGAATATTCATCCACAGGTAACTGAGTCCCTGCTTCAGGAGCTTTTTACAAGTAATGGCCCGGTTGAAGGTTGTAAACTTATTAGAAAGGAGAAGTCATCCTATGGATTCATTCACTATTTTGATCGTAGATCAGCTGCTCTTGCCATATTATCTCTCAATGGAAGGCACCTATTTGGTCAGCCTATCAAAGTTAACTGGGCATATGCTAGTGGACAGAGAGAGGATACATCAGGTCATTTCAACATATTTGTTGGTGATCTTAGTCCTGAGGTTACTGATGCTACATTGTTTGCTTGCTTTTCTGTTTACGCCAGCTGCTCAGATGCAAGGGTTATGTGGGATCAGAAAACAGGACGATCAAGAGGGTTCGGATTTGTTTCATTCCGTAATCAACAGGATGCACAAAGCGCTATTAATGATTTGACTGGCAAGTGGCTTGGTAGTAGACAAATACGCTGTAACTGGGCAGCAAAAGGTGCTGGTTCTAGTGAGGACAGACAAAGTTCAGACAGTAAAAGTGTGGTTGAACTAACAAATGGCTCATCTGAAGATGGTAAGGAGACAACTAACGGTGATGCCCCAGAGAACAATCCTCAATACACTACCGTCTATGTGGGAAATCTTGCGCCAGAGGTAACCCAGCCTGATCTCCATCGCCACTTCCATAATCTTGGGGCTGGTGTGATAGAGGAGGTTCGTGTCCAGCGTGATAAAGGGTTCGGTTTTGTGAGGTACAGTACTCATGCTGAAACAGCAATGGCAATTCAGATGGGGAATACCCAGTCTTTTCTTTTGGGCAAACAAATTAAGTGCTCCTGGGGGAGCAAGCCCACTCCTCCGGGAACTGCTTCAAATCCTCTTCCCCCACCTGCTACTGCCCCTCTGCCCGGGTTCTCTGCATCCGATCTTCTGGCCTATGAGCGTCAGCTAGCAATCAGCAAGATGGGTGGTGTCCATGCCCTGATGCATCCCCAAGGACAGCATCCTCTTAAACAGGCAGCACTTGGAGGAAGCCAGGCGATATATGACGGTGGGTTCCAGAATGTTGCTGCACAACAAATGATGTACTACCAGTGA 1254 0.4737 MQNPRLKQHQQQALMQQALMQQQSLYHPGLLAAPQIEPIPSGNLPPGFDPSSCRSVYVGNIHPQVTESLLQELFTSNGPVEGCKLIRKEKSSYGFIHYFDRRSAALAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYASCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAAKGAGSSEDRQSSDSKSVVELTNGSSEDGKETTNGDAPENNPQYTTVYVGNLAPEVTQPDLHRHFHNLGAGVIEEVRVQRDKGFGFVRYSTHAETAMAIQMGNTQSFLLGKQIKCSWGSKPTPPGTASNPLPPPATAPLPGFSASDLLAYERQLAISKMGGVHALMHPQGQHPLKQAALGGSQAIYDGGFQNVAAQQMMYYQ 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele40g0205 417 FunFam oligouridylate-binding protein 1B-like isoform X2 1 136 - -
Lele40g0205 417 FunFam Oligouridylate-binding protein 1C 237 339 - -
Lele40g0205 417 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 52 338 - -
Lele40g0205 417 CDD RRM2_PUB1 140 214 - -
Lele40g0205 417 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 54 128 IPR000504 GO:0003723
Lele40g0205 417 CDD RRM1_TIA1_like 56 126 - -
Lele40g0205 417 SMART rrm1_1 140 213 IPR000504 GO:0003723
Lele40g0205 417 SMART rrm1_1 55 124 IPR000504 GO:0003723
Lele40g0205 417 SMART rrm1_1 261 331 IPR000504 GO:0003723
Lele40g0205 417 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 139 217 IPR000504 GO:0003723
Lele40g0205 417 MobiDBLite consensus disorder prediction 220 259 - -
Lele40g0205 417 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 56 122 IPR000504 GO:0003723
Lele40g0205 417 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 141 211 IPR000504 GO:0003723
Lele40g0205 417 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 262 326 IPR000504 GO:0003723
Lele40g0205 417 MobiDBLite consensus disorder prediction 217 259 - -
Lele40g0205 417 SUPERFAMILY RNA-binding domain, RBD 38 132 IPR035979 GO:0003676
Lele40g0205 417 FunFam oligouridylate-binding protein 1-like isoform X2 137 232 - -
Lele40g0205 417 CDD RRM3_TIA1_like 260 335 - -
Lele40g0205 417 Gene3D - 137 237 IPR012677 -
Lele40g0205 417 Gene3D - 1 136 IPR012677 -
Lele40g0205 417 SUPERFAMILY RNA-binding domain, RBD 133 230 IPR035979 GO:0003676
Lele40g0205 417 Gene3D - 238 339 IPR012677 -
Lele40g0205 417 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 260 335 IPR000504 GO:0003723
Lele40g0205 417 SUPERFAMILY RNA-binding domain, RBD 248 339 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele40g0205 Lele-ChrLele40 1588044 1592496 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele40g0205 55 328 Eukaryotic Initiation Factors Gene Family AT1G71770 27.143 8.03e-27 111
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele40g0205 40 1588044 1592496 Lele40g0205 40 1588044 1592496 ECH
Lele37g0216 37 1679497 1683784 Lele40g0205 40 1588044 1592496 hybridization
Lele38g0217 38 1702543 1707117 Lele40g0205 40 1588044 1592496 hybridization