Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele40g0185 ATGATGTTTCATCCTGGAGGAATTCCCAAACAAACTTGTAGTCTACTTGCTGTCACATGTGGCAAAAACGTTGAGCATGAGGTCAACAAGAAACTCACTCAGAATCAGCTCAAATATCCTTTTCCCGAGTTAACTTCTTCAGGGCGTCTGGAGGTTCAAACTCTAAACGATCCAGAAAAAGAACAGTTTCGTAAATTTCTCGAGTCTTATCAACCAAATTTTGTATATTTACAAGGAGAGCAGCTTGCAAATGGTGAAGTTGGTTCTTTGGTCTGGCAAGGCGAAGAATTGGTCACCTCTGAAGCTATATCAGAGCTCTTTGGTCCCACATTGCCAACAGCTGTATACTTGGAAATCCCAAATGGGGAAAATTTGGCAGAAACTCTTCATCTTAAGGGAGTTGCGTATGTGATTTATTGGAAAAGCACGTTTTCTTGTTATGCTGCTTGCCATTTTCGTCAAGCATTTCTTTCAGTGGTGCAGAGCTCTTCTACGCATACATGGGATGCCTTTCACCTTGCCCGTGCTTCGTTTGAGTTTTATTGTGTTCAAAACAATCAAGTCCTTCCTGGTGAGAAACATAATTCTAGTGACAATATAGGGCCACACCTTCTTGGAGACTGTCTTCAAATCAATATTGACCCTCCTGAGGTGTGTGACGATGATGAGGAAAGTTCCTCAGGCACTCTTCCTGCTATAAAGATACATGATGATGAAGTTAAGTTGAGATTTCTCATCTGTGGTTCACCTTCAATTGTGGATGCGTCACAGTGGAGATCGTTGGAGGATGGACTCAAAGCACTCTTAACCATTGAAATACGGGGGAGCAAACTCCATGGCAAGTTTAGTGCTCCCCCACCACCTCTTCAAGCAGCCACTTTTTCTCGAGGAGTTGTGACCATGCGATGTGATATATCTACCTGTAGTTCAGCCCACATCTCACTTCTGGTGTCTGGCAGTGCTCAAACTTGCTTCAATGATCAGTTATTGGAGAATCATATAAAAAATGAGATAATTGAGAAGAGTCAACTAGTTCGTGCCCAAATTGATGAGGGGAAAAAACAGCATGTCTCTGAACCTCGTCGATCTGCCTCAATTGCTTGTGGAGCAGCTGTATTTGAAGTTTGCATGAAGCTTCCTCTATGGGCTTCGCAGGTATTGAGACAGCTAGCTCCTGATATTACTTATCGAAGTTTAGTTGCACTTGGGATTGCTAGCATTCAGGGGTTGCCTATTGCTTCATTTGAGAAAGCTGATGCTGAGCGCCTGCTTTTCTTTTATCGAAGTCCAGAGAAAGATAGTGATGCAGATAAAATCATTTTCAGCAGCCCCCCTGGTTGGTTGAAACCACCCCCTCCCACTAGAAAAAGGTGTGAACTAAGTCAAGAGGCAAGCCCTGGCCTTCAAGATGGTGTTTTAACTGGGCAAGGTACTAGTCAAAAAGTAGATGAAGAGGAAAAGGATACAAAAATGGTGAATGGAATTGGCACATCCTTAACTCCAGCTAGGCAGAGACTAAAAGTGTCTGCAATGAGGCCCATCCCTCGCGTTCATCGCCATAGAATGATGCTCTTTTCTGGGCCTTCTGAGACAAATGGTTATGACGGTGCCCAAGTTGAAGCTAGTTTACCACTTGTTGTCCCTGCAAAGCGCAGTAATACTGGTTCAAGTTCTGCAACACAGAGAAGGTCATTTTCAGGCTCAGCTCAGGCTAAGCAGATTATTTCCTTGAACCCACTGCCCTTGAAAAAACACGGGTGTGGCAGAGGCCAGATCCAAACTTGCTCAGAGGAGGAATTTTTGAAAGATGTCATGGAGTTTCTAATGCTTCGAGGACATAGTAGATTAATTCCTCAGGGTGGGCTTGCTGAGTTTCCTGATGCCATACTCAATGGGAAACGGCTTGACCTCTACAACTTGTATAAAGAGGTGGTTACTAGGGGAGGATTCCATGTTGGTAATGGCATCAATTGGAAAGGACAAATCTTCTCAAAGATGCGCAATTACACAACCACCAATAGAATGACTGGCGTTGGAAATACACTCAAAAGGCATTATGAAACTTACCTTCTAGAATATGAATTAGCACATGATGATGTGGATGGGGAGTGCTGCTTGTTGTGTCACAGTAGCGCAGCTGGGGATTGGGTGAATTGTGGCATATGTGGCGAATGGGCCCACTTTGGCTGTGACAGACGACAAGGTCTTGGTGCATTTAAGGATTATGCAAAAACAGATGGACTAGAATATATTTGTCCTCACTGTAGTGTAACAAATTTCAAGAAGAAACCCTCAGGTGTTGCTAATGGGTTTTCTCAGGGGTCAATGGTATCAAAACCTCTTTGA 2346 0.4361 MMFHPGGIPKQTCSLLAVTCGKNVEHEVNKKLTQNQLKYPFPELTSSGRLEVQTLNDPEKEQFRKFLESYQPNFVYLQGEQLANGEVGSLVWQGEELVTSEAISELFGPTLPTAVYLEIPNGENLAETLHLKGVAYVIYWKSTFSCYAACHFRQAFLSVVQSSSTHTWDAFHLARASFEFYCVQNNQVLPGEKHNSSDNIGPHLLGDCLQINIDPPEVCDDDEESSSGTLPAIKIHDDEVKLRFLICGSPSIVDASQWRSLEDGLKALLTIEIRGSKLHGKFSAPPPPLQAATFSRGVVTMRCDISTCSSAHISLLVSGSAQTCFNDQLLENHIKNEIIEKSQLVRAQIDEGKKQHVSEPRRSASIACGAAVFEVCMKLPLWASQVLRQLAPDITYRSLVALGIASIQGLPIASFEKADAERLLFFYRSPEKDSDADKIIFSSPPGWLKPPPPTRKRCELSQEASPGLQDGVLTGQGTSQKVDEEEKDTKMVNGIGTSLTPARQRLKVSAMRPIPRVHRHRMMLFSGPSETNGYDGAQVEASLPLVVPAKRSNTGSSSATQRRSFSGSAQAKQIISLNPLPLKKHGCGRGQIQTCSEEEFLKDVMEFLMLRGHSRLIPQGGLAEFPDAILNGKRLDLYNLYKEVVTRGGFHVGNGINWKGQIFSKMRNYTTTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYICPHCSVTNFKKKPSGVANGFSQGSMVSKPL 781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele40g0185 781 CDD ARID 596 694 - -
Lele40g0185 781 CDD PHD_ARID4_like 704 755 - -
Lele40g0185 781 SMART bright_3 595 699 IPR001606 GO:0003677
Lele40g0185 781 SMART ARID_2 591 694 - -
Lele40g0185 781 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 8 776 IPR042293 -
Lele40g0185 781 MobiDBLite consensus disorder prediction 441 488 - -
Lele40g0185 781 SUPERFAMILY FYVE/PHD zinc finger 697 761 IPR011011 -
Lele40g0185 781 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 698 761 IPR013083 -
Lele40g0185 781 ProSiteProfiles ARID domain profile. 594 698 IPR001606 GO:0003677
Lele40g0185 781 SUPERFAMILY ARID-like 594 709 IPR036431 GO:0003677
Lele40g0185 781 Gene3D - 590 697 IPR036431 GO:0003677
Lele40g0185 781 Pfam ARID/BRIGHT DNA binding domain 597 694 IPR001606 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele40g0185 Lele-ChrLele40 1453405 1459980 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele40g0185 2 770 ARID Transcription Factor Family AT3G43240 59.432 0.0 924
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Lele40g0185 ARID 1.5e-14 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele37g0187 37 1498639 1505307 Lele40g0185 40 1453405 1459980 hybridization
Lele38g0194 38 1543367 1550975 Lele40g0185 40 1453405 1459980 hybridization