Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele40g0180 ATGTGCAGTAATCCTCTGGCGATGATTAAGAACATGACTGACACAGATATGGCGAACTATGAGATGCAGATGGGGATCACAAAGAGCAGGAAGGCAACGGGGGTGAGGCCTGACGTGGTTGTAGCGGCGGACGGGAGTGGAAATTTTAGGACGGTGTCGGCAGCAGTGGCTGCGGCACAAGATGAGAATAGTAAGAGGAGATATGTGATTAGGATAAAAGCAGGAGTTTACAGTGAGAATGTGGAAGTTCCGAAGAAGAAGACGAATATCATGTTCTTGGGAGATGGGAGACGTAATACTATCATTACAGGAAGAAGGAACGTTGTTGACGGAAGCACACGACGTTCCATTCTGCCACAGTTGTTTGACAAGCTTACATGCTCCTACCGTCCCGCGGTGGGAGAACGATTCCTAGCTCGCGACATAACCTTTGAACACACGGCTGGGCCTTCGAAGCACCAAGCCGTCGCCCTCCGGGTTGGTTCCGACTTCGCCGCCTTCTACCAGTGCGATATCCTCGCCTACCAGGACACCCTCTACGTCCACAACAACCGCCAGTTCTTCATCAACTGCCCCATTTCCGGCACCGTCGACTTCATCTTTGGCAACGCCGCAGCCGTATTCCAAGACTGCGACATCCAAGCCTGCCTCCCCGGCTCCGGCCAGAAGAACATGGTTACCGCACAGGGACGGGTTGACCCGAACCAGAACACCGGCATCGTGATCCAGAAATGCCGTATCGGAGCAACAAGGGACCTGGAGGGAAGGAAGACGAGTGTCAAGACCTTCCTGGGCCGGCCATGGAAGCAATATTCAAGGACGGTGATAATGCAGTCGACCATAACGGACGTGATTGATCCGGCGGGATGGCATGAGTGGAGTGGGAACTTTGCTTTGAACACTCTGTTCTATGGAGAGTATCAGAATAGAGGCGCCGGCACCGGGACGGCGAACAGAGTGAAGTGGAGGGGGTTCATGGTTATGACCAGTGCTTCCGAGGCTCAGAGTTTCACTGCTGCCAACTTTATTGGGGGCTCTAACCGGTTGGGTTCCACTGGGTTCCCTTTCTCTCTTGGCCTTTAG 1083 0.5355 MCSNPLAMIKNMTDTDMANYEMQMGITKSRKATGVRPDVVVAADGSGNFRTVSAAVAAAQDENSKRRYVIRIKAGVYSENVEVPKKKTNIMFLGDGRRNTIITGRRNVVDGSTRRSILPQLFDKLTCSYRPAVGERFLARDITFEHTAGPSKHQAVALRVGSDFAAFYQCDILAYQDTLYVHNNRQFFINCPISGTVDFIFGNAAAVFQDCDIQACLPGSGQKNMVTAQGRVDPNQNTGIVIQKCRIGATRDLEGRKTSVKTFLGRPWKQYSRTVIMQSTITDVIDPAGWHEWSGNFALNTLFYGEYQNRGAGTGTANRVKWRGFMVMTSASEAQSFTAANFIGGSNRLGSTGFPFSLGL 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele40g0180 360 PANTHER PECTINESTERASE 1 343 - -
Lele40g0180 360 ProSitePatterns Pectinesterase signature 2. 193 202 IPR033131 -
Lele40g0180 360 FunFam Pectinesterase 32 360 - -
Lele40g0180 360 Gene3D - 32 360 IPR012334 -
Lele40g0180 360 SUPERFAMILY Pectin lyase-like 34 359 IPR011050 -
Lele40g0180 360 Pfam Pectinesterase 38 345 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele40g0180 Lele-ChrLele40 1416639 1419002 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele40g0180 1 360 Carbohydrate Esterase AT3G14310 65.414 1.88e-175 499