Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele40g0175 ATGGATGGCTTGGCAGGAACAGATGACAATATGAGTGACTCTCCGGGGATGGAATTAACTGGAAAGATCATGGTCATAGCTATAATATTCCTCTTTTTTGTGATTGTGGTCGTCTGTTTCCTCCATCTCTACGCCAAATTGTTCTGGTGGAGCATTGAAGGAAGCAGCAGCACCCCCCACCCCCGCCGCCGCCGCCGCCGCCGCTTTGTCTTCGCACCAGGTCAAGACCCCGCTATCTACGGCGTCCAGAGACGTGGACTTGAACCAGAAGTCCTTAGATCCTTACCTGTATCGGTATACCGACCAGAGGATTTCAAAGATGGTTTGGAATGTGCAGTTTGTCTCAGCGAGCTTGTTGATGGAGAAAAAGCAAGGATATTACCCAAATGCAATCATGGGTTTCACGTAGAATGCATTGATATGTGGTTCCAATCCCATTCTACTTGTCCACTTTGCAGGAACCTGGTCGCTTCCGAGTCCTCTGAATTCAATTACAGTCCAGATGTTCGAGGAAATGTCTCAGACAATTCTAGTCAGTCATCATCAGACTCGGAAAGTTCAGATGCTACGAGTGAGGAAGATTTAGAGTCTCCAAATTTCCCCACAAATGTGTTGATTTGGGGAAATCAAACCCAAGTAAATTCCATTGGCGCAGGTCCTTCTATTCAGGCACCTTCTTCCTCATCATCATCAGCGACAGCAGATAGTTGTGAAAGTGGAAACAATAACAATAGACGTAATGGAATGTTGGTGATTGACATACCAAGAGAGATGAATCAGTCATCTGTACCTTCTACTAGCAGGTGTGCTGAAGAGGATTTGAAGTCACCAATGACATCTAGATTCAAATCATTCACGAGGATGTTAAGCATGAAGTTCAGTCCTCGGAGTCCTAGTTCTGTCGATGTGGAACAAGCAGGGAGAGGACAGAGCTAG 936 0.4605 MDGLAGTDDNMSDSPGMELTGKIMVIAIIFLFFVIVVVCFLHLYAKLFWWSIEGSSSTPHPRRRRRRRFVFAPGQDPAIYGVQRRGLEPEVLRSLPVSVYRPEDFKDGLECAVCLSELVDGEKARILPKCNHGFHVECIDMWFQSHSTCPLCRNLVASESSEFNYSPDVRGNVSDNSSQSSSDSESSDATSEEDLESPNFPTNVLIWGNQTQVNSIGAGPSIQAPSSSSSSATADSCESGNNNNRRNGMLVIDIPREMNQSSVPSTSRCAEEDLKSPMTSRFKSFTRMLSMKFSPRSPSSVDVEQAGRGQS 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele40g0175 311 FunFam RING-H2 finger protein ATL3 80 158 - -
Lele40g0175 311 MobiDBLite consensus disorder prediction 216 247 - -
Lele40g0175 311 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 79 158 IPR013083 -
Lele40g0175 311 ProSiteProfiles Zinc finger RING-type profile. 111 153 IPR001841 -
Lele40g0175 311 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 15 159 IPR044675 -
Lele40g0175 311 SUPERFAMILY RING/U-box 91 158 - -
Lele40g0175 311 MobiDBLite consensus disorder prediction 166 203 - -
Lele40g0175 311 CDD RING-H2_EL5_like 110 153 - -
Lele40g0175 311 Pfam Ring finger domain 110 153 IPR001841 -
Lele40g0175 311 SMART ring_2 111 152 IPR001841 -
Lele40g0175 311 MobiDBLite consensus disorder prediction 166 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele40g0175 Lele-ChrLele40 1389738 1390673 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele40g0175 16 290 C3H Transcription Factor Family AT1G53820 42.955 1.71e-67 211
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele40g0175 40 1389738 1390673 Lele40g0175 40 1389738 1390673 ECH
Lele37g0173 37 1426371 1427311 Lele40g0175 40 1389738 1390673 hybridization
Lele38g0182 38 1471940 1472875 Lele40g0175 40 1389738 1390673 hybridization