Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele40g0169 ATGGTTGTGAAAATGGCTGAGGGACTGGATAAGCCTTTGCTTGACCCTGAGAATTTCAGTCGAGAGGGTGTTGATTTGGAACGCATACCATTAGAAGAAGTTTTTGAGCAGCTAAAAACATCGCCAAGAGGACTTTCATCTGATGATGCTGAAGCCAGACTGGTGATATTTGGCCCTAACAAGCTTGAAGAGAAACCTGAAAATAAATTTTTGAAGTTTCTGAGTTTCATGTGGAACCCTCTATCATGGGTTATGGAAGCTGCTGCTATAATGGCAATTGCTCTTGCCAATGGTGGAGGGGAGGGTCCTGATTGGCAGGACTTTGTAGGGATTGTATGCCTACTGGTCATAAACTCCACCATTAGTTTTATTGAAGAGAATAATGCTGGAAATGCAGCAGCTGCACTGATGGCTCGTTTAGCTCCAAAAACGAAGGTTCTGAGAGATGGCCAGTGGCAAGAGCAAGATGCATCTATTTTAGTACCTGGAGATATAATCAGCATAAAGCTGGGAGATATCGTTCCAGCTGATGCTCGCCTTCTCGAAGGAGACCCTCTAAAAATTGACCAGGCAAGTAGTTCGGCTCTCACCGGAGAATCTTTGCCTGTAACAAAAAGGACAGGAGATGAAGTCTTTTCTGGCTCAACATGTAAGCATGGAGAGATTGAAGCTGTAGTCATTGCAACAGGAGTTCACACCTTTTTTGGAAAGGCAGCACACTTAGTTGATAGTACTATAGTTGTTGGACATTTTCAAAAGGTCCTAACCTCAATTGGGAACTTCTGCATTTGCTCTATAGCTGTAGGGATGGTCATTGAAATCATAGTAATGTATCCTATAGAGAAACGTTCATATAGGGATGGAATCAACAACCTTCTTGTTCTCTTAATTGGAGGAATTCCCATAGCCATGCCAACAGTTCTCTCTGTGACGCTCGCGATTGGATCTCATCGGCTTTCACAACAGGGAGCCATCACAAAGAGAATGACAGCAATTGAAGAAATGGCAGGCATGGATGTACTATGCAGTGATAAGACCGGAACTCTTACCCTGAATCGCCTTACCGTTGACCGAAACCTTGTAGAGGTCTTTAACGGCAATATGGACAAAGATATGGTTGTCCTACTAGCGGCCAGAGCAGCTAGAGTGGAAAATCAGGATGCCATTGATGCTGCCATCGTTAATATGCTAGCCGATCCGAGGGAGGCACGTGCAAACATCACTGAAGTTCATTTTCTACCTTTCAATCCAGTAGACAAGCGTACTGCTATTACATATTATGATTCTGAAGGCAATTGGTATAGGGCCAGCAAAGGAGCTCCTGAACAGATTCTAAGTATGTGCCAAGAGAAAGATGAGATTGCTGGAAAAGTTCATACCATCATTGACAAATATGCTGAAAGGGGTTTGCGATCTCTTGCAGTTGCTTTGCAGGAAGTTCCTAAGAAGTCCAAGGAGAGTCCCGGAGGTCCTTGGACTTTTTGTGGGCTGCTGCCCTTGTTTGATCCTCCAAGACATGATAGTGCTGAGACCATACGTAGGGCACTCAACCTCGGAGTCAATGTTAAGATGATTACAGGGGATCAGCTGGCAATTGCAAAAGAGACAGGCCGAAGACTTGGAATGGGGACAAATATGTATCCTTCTTCTTCATTGTTAGGCCGTGACAAAGATGAAAATGAAGCCCTCCCAGTAGATGAGCTCATTGAAAAGGCAGATGGCTTTGCCGGTGTATTTCCTGAACACAAGTATGAAATTGTGAAAATCTTACAAGAAAAGAAGCATGTAGTTGGAATGACTGGAGATGGTGTAAATGATGCACCAGCTTTAAAGAAAGCGGACATTGGGATTGCTGTGTCAGATGCAACTGATGCTGCAAGAGGTGCTGCTGATTTAGTCTTAACCGAGCCTGGTTTAAGTGTTATTGTCAGTGCTGTGTTAACTAGCCGAGCTATATTTCAAAGAATGAAGAATTATACAATATATGCAGTCTCTATAACCATTCGTATAGTGCTTGGTTTTATGCTTCTGGCATTGATTTGGGAGTATGATTTTCCACCTTTCATGGTCCTGATCATCGCCATATTGAATGATGGGACAATTATGACCATATCCAAAGATCGCGTAAAGCCATCACCAACTCCAGACAGTTGGAAGCTGCCAGAGATATTTGCAACTGGAATAGTTATTGGCACTTACCTTGCTTTTATCACCGTTCTGTTCTACTGGGCAGTAGTGGACACCACTTTCTTTGAGACTCACTTCCATGTAGCCTCCTTATCCAGTGACAGTGAGAAAGTTTCATCCGCTGTATATCTTCAAGTCAGTATCATCAGCCAGGCTTTGATTTTTGTGACACGAAGTCAAGGATGGTCATATCTAGAGAGACCTGGAGCTCTCTTGATGTGTGCCTTTGTTGTAGCTCAACTGGTGGCCACCTTGATAGCTGTGTACGCACATATCAGCTTTGCTAAAATCACAGGCATTGGATGGGGATGGGCTGGTGTTATATGGTTATACAGCTTGATCTTCTATATACCTTTGGACATTATCAAGTTCACTATTCGCTACATTTTGAGTGGCCAAGCCTGGAATCTAGTATTTGACAGAAAGACTGCTTTTAGTTCTAAGAAAGACTATGGGAAAGAAGATAGGGCTGCACGGTGGATTGTTTCTCAGAGAAGCTTACAAGGATTGTCGGGCACAGACTTAGAGGCAAAGAATGGAATCGGAAGGCGATCTTCTTCTCTGATTGCTGAACAAGCCAGAAGACGTGCTGAAATCGCGAGGCTGAGAGAATTACACACTTTGAGAGGACATGTAGATTCTGTTCTGAGACTGAAGAACTTGGACCGGAGTGTTCTTCAATCAGCACACACAGTGTGA 2886 0.4359 MVVKMAEGLDKPLLDPENFSREGVDLERIPLEEVFEQLKTSPRGLSSDDAEARLVIFGPNKLEEKPENKFLKFLSFMWNPLSWVMEAAAIMAIALANGGGEGPDWQDFVGIVCLLVINSTISFIEENNAGNAAAALMARLAPKTKVLRDGQWQEQDASILVPGDIISIKLGDIVPADARLLEGDPLKIDQASSSALTGESLPVTKRTGDEVFSGSTCKHGEIEAVVIATGVHTFFGKAAHLVDSTIVVGHFQKVLTSIGNFCICSIAVGMVIEIIVMYPIEKRSYRDGINNLLVLLIGGIPIAMPTVLSVTLAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNRLTVDRNLVEVFNGNMDKDMVVLLAARAARVENQDAIDAAIVNMLADPREARANITEVHFLPFNPVDKRTAITYYDSEGNWYRASKGAPEQILSMCQEKDEIAGKVHTIIDKYAERGLRSLAVALQEVPKKSKESPGGPWTFCGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIAKETGRRLGMGTNMYPSSSLLGRDKDENEALPVDELIEKADGFAGVFPEHKYEIVKILQEKKHVVGMTGDGVNDAPALKKADIGIAVSDATDAARGAADLVLTEPGLSVIVSAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLLALIWEYDFPPFMVLIIAILNDGTIMTISKDRVKPSPTPDSWKLPEIFATGIVIGTYLAFITVLFYWAVVDTTFFETHFHVASLSSDSEKVSSAVYLQVSIISQALIFVTRSQGWSYLERPGALLMCAFVVAQLVATLIAVYAHISFAKITGIGWGWAGVIWLYSLIFYIPLDIIKFTIRYILSGQAWNLVFDRKTAFSSKKDYGKEDRAARWIVSQRSLQGLSGTDLEAKNGIGRRSSSLIAEQARRRAEIARLRELHTLRGHVDSVLRLKNLDRSVLQSAHTV 961
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele40g0169 961 Pfam Cation transporter/ATPase, N-terminus 29 91 IPR004014 -
Lele40g0169 961 Gene3D - 142 229 - -
Lele40g0169 961 SFLD p-type atpase 324 652 IPR044492 -
Lele40g0169 961 SUPERFAMILY Calcium ATPase, transduction domain A 142 242 IPR008250 -
Lele40g0169 961 SUPERFAMILY HAD-like 338 647 IPR036412 -
Lele40g0169 961 FunFam Plasma membrane ATPase 142 229 - -
Lele40g0169 961 ProSitePatterns E1-E2 ATPases phosphorylation site. 344 350 IPR018303 -
Lele40g0169 961 PRINTS P-type cation-transporting ATPase superfamily signature 342 356 - -
Lele40g0169 961 PRINTS P-type cation-transporting ATPase superfamily signature 518 528 - -
Lele40g0169 961 PRINTS P-type cation-transporting ATPase superfamily signature 600 619 - -
Lele40g0169 961 PRINTS P-type cation-transporting ATPase superfamily signature 623 635 - -
Lele40g0169 961 PRINTS P-type cation-transporting ATPase superfamily signature 496 507 - -
Lele40g0169 961 PRINTS P-type cation-transporting ATPase superfamily signature 192 206 - -
Lele40g0169 961 Pfam haloacid dehalogenase-like hydrolase 338 614 - -
Lele40g0169 961 SFLD C1.7: P-type atpase like 324 652 - -
Lele40g0169 961 PANTHER CALCIUM-TRANSPORTING ATPASE 28 894 - -
Lele40g0169 961 Gene3D - 354 501 IPR023299 GO:0000166
Lele40g0169 961 CDD P-type_ATPase_H 44 853 IPR006534 GO:0008553|GO:0016020|GO:0120029
Lele40g0169 961 FunFam Plasma membrane ATPase 494 648 - -
Lele40g0169 961 Gene3D - 104 827 - -
Lele40g0169 961 PRINTS H+-transporting ATPase (proton pump) signature 772 793 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lele40g0169 961 PRINTS H+-transporting ATPase (proton pump) signature 572 588 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lele40g0169 961 PRINTS H+-transporting ATPase (proton pump) signature 600 616 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lele40g0169 961 PRINTS H+-transporting ATPase (proton pump) signature 631 656 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lele40g0169 961 PRINTS H+-transporting ATPase (proton pump) signature 458 476 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lele40g0169 961 TIGRFAM ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase 44 818 IPR006534 GO:0008553|GO:0016020|GO:0120029
Lele40g0169 961 Gene3D - 913 961 - -
Lele40g0169 961 SMART Cation_ATPase_N_a_2 25 97 IPR004014 -
Lele40g0169 961 FunFam Plasma membrane ATPase 354 501 - -
Lele40g0169 961 Pfam E1-E2 ATPase 140 321 - -
Lele40g0169 961 SUPERFAMILY Calcium ATPase, transmembrane domain M 25 859 IPR023298 -
Lele40g0169 961 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 111 549 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lele40g0169 961 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 575 681 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lele40g0169 961 FunFam ATPase 4 plasma membrane-type 590 827 - -
Lele40g0169 961 Gene3D - 339 637 IPR023214 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele40g0169 Lele-ChrLele40 1342599 1350116 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele40g0169 5 961 Primary Pumps ATPases AT1G17260 79.415 0.0 1524