Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele40g0163 ATGGAATTGACCCCAGAAGCTGCAAATAAAGGCTATTCTGATCATAGCAGAGAAGAAAAATTAGTGGATGAGGAAGAGGATTTAGCTGAAACCAGTAATAAAGAAAGCAGCAGTAAGTTCTATCCCTTTTCTAGTCCTCCTCCTCCTTCACCTCCAAATCTATGGTTGGGGATGCTTCATCATTATCACCAGCAGCAGCATCCTCACGATCATCATCATCATCAACAACAACAGTCTCCGGAGACCACAACCCCTTGTGAGTCTCACAATTCGTCATCTGGGTTAGGGTTACACCATCAGGATGCACCTTCTAATTCCAATTCAGCCATTAACAATCCCCACAAGAAGCTAGACTTCATGGACCTATCTCTCGGGAACAAGGAAGAAGATGAAGCCAACAACAAACCTATCGAGAAAGAGCACATGTTTGATAAGGTTGTGACTCCAAGTGATGTCGGAAAACTGAACCGCCTCGTGATACCGAAACAACACGCCGAGAGGTACTTCCCGCTCGACTCTTCCTCCAACGAGAAAGGACTTCTCTTGAATTTCGAGGACCGCAACGGCAAGCTATGGCGCTTCCGGTACTCTTACTGGAACAGTAGCCAGAGCTATGTAATGACCAAAGGCTGGAGCCGTTTTGTTAAAGAGAAGAAGCTCGACGCCGGCGACATTGTATCCTTCCAACGCGGCCTTGGTGAATTGTATAGACATAGGTTGTACATAGACTGGAGGCGCCGGCCGGATTACGCCGCTACCGATCATTATCGCCATGCCGCCGCAATTACACCGTTACTCCTCCCAAATCAGCATTCCATCAAATGGGACGGTAGATTATACTCAGTTCCTTCGGTGGCACAACCACCTCCGCGACACCTAGAACATTTCCAGCAAGTGAACTACAACAATTACCGCTTTCAGCAACAACAACACCAACAACTACTTCAGTACCAGCGACAACAACAACAACAACATCATCATCATCACCAGCTCTATAGTGGAAGTCAAGGAAGCTATAATGAGCTGAATTTGGGATCTGGGTCGTCGCTTTACTACCTGAGGACGGCGTCAGGGTCGGTGGCGCCGGGAGGTCGAAATTTAATGGAGCACCGAGAGGGAGGCGGCAATGTAAGTCCGATGATCATCGATTCGGTTCCAGTAGTCCATGTTAAGGGCAGTTCTAGTAGTGGTAGAATTACTGATACAACAGCAAAGAAGCTTAGGCTATTTGGGGTGAATATGGAATGTTCTTCGTCGACATCAAACATAGTAGGACATGTGCCAATGGCGGATTCATCATTTTCCTCACCAAATCTTCAGTATTTGAGAGAATCGACCCATCATGAAGAACAAGACCCACTTTCTTCTTCATCATCGTCGTCAGCATCAAGCTCTTTATCCAGTTTGATTATCATTACTTTTCTTCTTGCTAAATTTAGCTACCCTATATATATAGCTGACTTGGCTTCTGGTTTTTCTGCTTTACATTCTTGTGGTGTTCTCTTGTATTTACCAGCCGCCTTCTTGTTGGATTACCACTGTACAAAAACTTGCCGTCTGAAAGCAAAAAAGTGGGCTCTTCCCTTTATTTCAATTCAATGCTGGAAAAGAGTCAAAGTATTGATGATACCACTAGAGAAGACAGCCTTCAAGGATCTTAGAAAAGAATTCAACAGGTGA 1680 0.4518 MELTPEAANKGYSDHSREEKLVDEEEDLAETSNKESSSKFYPFSSPPPPSPPNLWLGMLHHYHQQQHPHDHHHHQQQQSPETTTPCESHNSSSGLGLHHQDAPSNSNSAINNPHKKLDFMDLSLGNKEEDEANNKPIEKEHMFDKVVTPSDVGKLNRLVIPKQHAERYFPLDSSSNEKGLLLNFEDRNGKLWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGLGELYRHRLYIDWRRRPDYAATDHYRHAAAITPLLLPNQHSIKWDGRLYSVPSVAQPPPRHLEHFQQVNYNNYRFQQQQHQQLLQYQRQQQQQHHHHHQLYSGSQGSYNELNLGSGSSLYYLRTASGSVAPGGRNLMEHREGGGNVSPMIIDSVPVVHVKGSSSSGRITDTTAKKLRLFGVNMECSSSTSNIVGHVPMADSSFSSPNLQYLRESTHHEEQDPLSSSSSSSASSSLSSLIIITFLLAKFSYPIYIADLASGFSALHSCGVLLYLPAAFLLDYHCTKTCRLKAKKWALPFISIQCWKRVKVLMIPLEKTAFKDLRKEFNR 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele40g0163 559 CDD B3_DNA 141 230 IPR003340 GO:0003677
Lele40g0163 559 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 65 450 IPR044800 GO:0003700
Lele40g0163 559 SMART B3_2 143 248 IPR003340 GO:0003677
Lele40g0163 559 FunFam B3 domain-containing protein 136 257 - -
Lele40g0163 559 Pfam B3 DNA binding domain 143 247 IPR003340 GO:0003677
Lele40g0163 559 MobiDBLite consensus disorder prediction 78 113 - -
Lele40g0163 559 MobiDBLite consensus disorder prediction 1 114 - -
Lele40g0163 559 Gene3D - 137 259 IPR015300 -
Lele40g0163 559 MobiDBLite consensus disorder prediction 313 337 - -
Lele40g0163 559 SUPERFAMILY DNA-binding pseudobarrel domain 140 233 IPR015300 -
Lele40g0163 559 ProSiteProfiles B3 DNA-binding domain profile. 143 248 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele40g0163 Lele-ChrLele40 1272957 1277485 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele40g0163 121 419 RAV Transcription Factor Family AT2G46870 48.397 1.27e-76 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lele40g0163 B3 3.8e-28 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele40g0163 40 1272957 1277485 Lele40g0163 40 1272957 1277485 ECH
Lele37g0157 37 1287298 1288749 Lele40g0163 40 1272957 1277485 hybridization
Lele38g0168 38 1362053 1364073 Lele40g0163 40 1272957 1277485 hybridization