LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele40g0161	ATGGATTTCGGGGGGGCCAACCAGCCGCGCCTGATCGGAGATTACATACTTGGACAGCAAATCGGGTCCGGTTCTTTTGCGGTGGTGTGGCACTCAAGGCATCGTCACTCAGGTTTGGAGGTTGCTGTTAAGGAGATTGACAAGAAACAGCTCAGCCCAAAAGTCAGTGAGAATCTGCTTAAAGAGATTTCTATTCTTAGCACCATCAATCACCCAAACATTATACGACTGTTCGAAGCAATCCAGACCAATGATAGGATTTACCTTATTTTGGAGTATTGTAATGGTGGTGACCTCGCTACTTACATTCATCAACGCGGAAAAGTTTTAGAATCCATTGCACGACATTTTATGAGACACTTAGCTGCGGGGTTGATGGTACTCCAAGAAAAGCACCTCATTCATAGAGATCTAAAACCACAGAACTTGCTATTGTCTAGTACTGGAGGTAGACCACTTCTAAAAATTGGCGATTTTGGTTTTGCAAGGTCTCTCACGCCCCAAGGGTTGGCAGACACGCTATGTGGTTCACCATTGTACATGGCTCCAGAGATAATTCAAAATCAAAAGTATGATGCCAAGGCTGATTTATGGAGCGTTGGAGCCATATTGTTCCAGCTAGTGACTGGGAGGCCACCATTTGATGGAAATAGTCAATTGCAGCTTTTTCAGAACATTTTAACATCCACTGAACTGCGGTTCCCACAAGAGGCTTTAAATGAGCTACATTCAGACTGTTTGGATCTTTGCAGAAAACTCTTACGTCTAAACCCAGTTGACCGATTGACATTCAAAGAATTTTTCGATCACAATTTCCTAAAGGAGCCCAGGCTAATTGTGAATGTTGAACGGTCTTCTATACAACCACCGGAAAGATCAATGGTCCAGCAATATGGTAGTATCTCAACATCTGACAAAGGGCCTCATTTGCATTCTGTTCATCATCTTGAGACATCAGTAGATGACCCAGTTGTAATCAGTTCTGCCATCAATGAGACCGTGCTGTTACAAAGAAAGCATAGTGGGAATCCTGCTGACACCAAGAGTGTTAAAGGCATCATTTCAACAACTACTTGTGACAAGCAGGGACTTGGTAATGTTGCTCAATTGTCGGACCAACCTCATGCTTCTCATTTGATGGAATCCATTGAGAAAGACTATGTCCTAGTCAATCATCACTTTGCATCGTTTGAGGATTTCTCCGATTGCTTTGAGGCATCTGTGCAAGATAATATCACAAGCAGGGTTTCAATCTGTCCTTCAAAGAGGGTTGACGTTGAAGCTGGAGTTGCAAAGCAAACAAAGGATTTAGCCTCTTGCTATGTTGGTGGAGAAGAAAGGACAAAAGGTGATAAACTTGAGGCATCCTCTGTATTTGCTGTCCTGAGGAAAGAGCAGGGGGCATCCTCAAAGCAGCCTTCGAGTAGGTTAGATTTGTTGCATCAATATGTACAGATTCTCTCAGAGCTTTCGCAAGAAAAATATAATGCAGGACTGCATTTAGAATCATTTGCGGTCGAACTGGTGGTTTTGGCTATATGGAAAAAAGCTATTGAAATTTGTGACTCTTGGTTGGCTTCCATCACTGAGGGCAAGTTGCCTGGAAGCACTTCAGGGAAGGAATCCACAATCTCATGCGGAGATGAAAGCACATCACATCCCACGCTAGAGAAAATAGATTTTATTGATCCTTCTGCTGTGTCCTTGTGGGCCAAGAAAGGATTTATTTTTGCAGTTGATCATGCTGAGAAACGTTCATGCCTTATTCAAAATATGGATGGTGCAGCTGAGATGCCAGATGCAATGGAAATCATATTTCAAAAAGCACTATCAATCGGCACAAGTGGTGCTGTAGATGAGTATATGGAAGATAGAGGTAAGGCAGCTGTATCATACTCAAAAGCGATGCTTCTACTTTCATTCATTTTGAACGAAGCAGTGCAACTTCCACTGAACCCACCATTCTCATTAACTCCTGCTAATGAGAAGAGAATTTTAGAGTATATTTTCAACCTGCAGTCGCATCAACTTCAGTCTTCATCAGAGCCTTCCAAGGCATCTGACATTCTTTCATGA	2076	0.4268	MDFGGANQPRLIGDYILGQQIGSGSFAVVWHSRHRHSGLEVAVKEIDKKQLSPKVSENLLKEISILSTINHPNIIRLFEAIQTNDRIYLILEYCNGGDLATYIHQRGKVLESIARHFMRHLAAGLMVLQEKHLIHRDLKPQNLLLSSTGGRPLLKIGDFGFARSLTPQGLADTLCGSPLYMAPEIIQNQKYDAKADLWSVGAILFQLVTGRPPFDGNSQLQLFQNILTSTELRFPQEALNELHSDCLDLCRKLLRLNPVDRLTFKEFFDHNFLKEPRLIVNVERSSIQPPERSMVQQYGSISTSDKGPHLHSVHHLETSVDDPVVISSAINETVLLQRKHSGNPADTKSVKGIISTTTCDKQGLGNVAQLSDQPHASHLMESIEKDYVLVNHHFASFEDFSDCFEASVQDNITSRVSICPSKRVDVEAGVAKQTKDLASCYVGGEERTKGDKLEASSVFAVLRKEQGASSKQPSSRLDLLHQYVQILSELSQEKYNAGLHLESFAVELVVLAIWKKAIEICDSWLASITEGKLPGSTSGKESTISCGDESTSHPTLEKIDFIDPSAVSLWAKKGFIFAVDHAEKRSCLIQNMDGAAEMPDAMEIIFQKALSIGTSGAVDEYMEDRGKAAVSYSKAMLLLSFILNEAVQLPLNPPFSLTPANEKRILEYIFNLQSHQLQSSSEPSKASDILS	691

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele40g0161	691	SUPERFAMILY	Protein kinase-like (PK-like)	11	318	IPR011009	-
	Lele40g0161	691	Pfam	Protein kinase domain	17	273	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele40g0161	691	ProSiteProfiles	Protein kinase domain profile.	15	273	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele40g0161	691	Gene3D	Transferase(Phosphotransferase) domain 1	6	347	-	-
	Lele40g0161	691	CDD	STKc_ATG1_ULK_like	21	272	-	-
	Lele40g0161	691	ProSitePatterns	Protein kinases ATP-binding region signature.	21	44	IPR017441	GO:0005524
	Lele40g0161	691	FunFam	Serine/threonine-protein kinase ATG1	7	315	-	-
	Lele40g0161	691	SMART	serkin_6	15	273	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele40g0161	691	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	133	145	IPR008271	GO:0004672\|GO:0006468
	Lele40g0161	691	PANTHER	SERINE/THREONINE-PROTEIN KINASE UNC-51-RELATED	8	529	IPR045269	GO:0004674\|GO:0006914
	Lele40g0161	691	FunFam	Non-specific serine/threonine protein kinase	4	95	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele40g0161	Lele-ChrLele40	1240192	1245316	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele40g0161	5	279	CBL-interacting serine-threonine protein kinases	AT2G30360	37.011	5.00e-56	195

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	Group-Pl-3	Lele40g0161		Pkinase	2.1e-72	CL0016