Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele40g0153 | ATGCAGCTCGCGACTTCTACGGCAATTTCCATGACGATGCAAACAGCGGTGGAGCTCGGAATATTCGACGTCATTCATAGAGCTGGTAACAACGCCAGGCTCTCTGCCGCCGAGATCGCGACGGAGCTCTCTTGCAAGAACTCTGAAGCGCCTTCAGCGATCGATCGTCTCCTCCGGCTTCTAACGTCTCACTCTGTTCTTTCCTGTTCCGTTGTCGCCGACGAGGATCGAGGGGCGGGGTGTTTCCGACGATTGTACGGCCTCACTCCGGTGGCCAAATTCTTTGTGAGAAATGCGGATGGAGTGTCGTTGGGCCCTTTTATGGCGTTGGTTCAAGATAAGGTCTTCCTTGATAGCTGGCCACAATTGAAGGATGCAATATGTGAAGGAGGTATAGCGTTCAATAGGGCCCATGGCTCACATTGTTTTGAGTATCCGAGACTGGATTCGAGGTTCAACGATGTTTTCAACAAGGCAATGGTGAATCATACCCCTTTAGTTTTGACTAAAATTCTAGAATCCTACAAAGGTTTTAAGGGTGTCACTACACTTGTTGACGTTGGTGGTGGTCTTGGGATTACTCTGAGCTTGATCACCTCCAGATATCCACATATTCGCGGAATCAATTTCGACTTGCCTCATGTCATCCAACACGCTCCTCCTTATCCTCGAGTGAAACTCGTGGGAGGAGATATGTTTGAAAGTGTGCCTCAAGGAGATGCCATCTTTATGAAGTGTATACTTCATGATTGGAGTGATGAATGGTGCCTGAAGCTGTTGAAGAACTGTCATGATGCGATTCCTGAAGATGGAAAAGTGATTGTGGTGGATGCAGTTTTGCCAATTGTTCCAGAGATTTCTGCTGCAGCGAAGACCACCTCCCAACTTGATCTGATTATGATGACTCAGACCTCAGGTGGCAAGGAGAGAAGTGAGCAAGAATTCATGGAGTTGGCTACATCAGCTGGGTTTAGAGGCATTAGATTTGATTGTTTTGTTTGTAACTTTTGGGTTATGGAGTTCTTCAAATAG | 1032 | 0.4709 | MQLATSTAISMTMQTAVELGIFDVIHRAGNNARLSAAEIATELSCKNSEAPSAIDRLLRLLTSHSVLSCSVVADEDRGAGCFRRLYGLTPVAKFFVRNADGVSLGPFMALVQDKVFLDSWPQLKDAICEGGIAFNRAHGSHCFEYPRLDSRFNDVFNKAMVNHTPLVLTKILESYKGFKGVTTLVDVGGGLGITLSLITSRYPHIRGINFDLPHVIQHAPPYPRVKLVGGDMFESVPQGDAIFMKCILHDWSDEWCLKLLKNCHDAIPEDGKVIVVDAVLPIVPEISAAAKTTSQLDLIMMTQTSGGKERSEQEFMELATSAGFRGIRFDCFVCNFWVMEFFK | 343 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele40g0153 | 343 | Pfam | Dimerisation domain | 11 | 62 | IPR012967 | GO:0046983 | |
| Lele40g0153 | 343 | SUPERFAMILY | S-adenosyl-L-methionine-dependent methyltransferases | 100 | 341 | IPR029063 | - | |
| Lele40g0153 | 343 | SUPERFAMILY | "Winged helix" DNA-binding domain | 1 | 98 | IPR036390 | - | |
| Lele40g0153 | 343 | PIRSF | O-mtase | 1 | 343 | IPR016461 | GO:0008168 | |
| Lele40g0153 | 343 | FunFam | Caffeic acid 3-O-methyltransferase | 1 | 95 | - | - | |
| Lele40g0153 | 343 | FunFam | Caffeic acid O-methyltransferase | 96 | 343 | - | - | |
| Lele40g0153 | 343 | Pfam | O-methyltransferase domain | 120 | 325 | IPR001077 | GO:0008171 | |
| Lele40g0153 | 343 | Gene3D | - | 1 | 95 | IPR036388 | - | |
| Lele40g0153 | 343 | CDD | AdoMet_MTases | 183 | 280 | - | - | |
| Lele40g0153 | 343 | Gene3D | Vaccinia Virus protein VP39 | 96 | 343 | IPR029063 | - | |
| Lele40g0153 | 343 | ProSiteProfiles | SAM-dependent O-methyltransferase class II-type profile. | 1 | 343 | IPR016461 | GO:0008168 | |
| Lele40g0153 | 343 | PANTHER | O-METHYLTRANSFERASE | 3 | 329 | IPR016461 | GO:0008168 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele40g0153 | Lele-ChrLele40 | 1173736 | 1175638 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lele40g0153 | 1 | 343 | Monolignol Biosynthesis Gene Families | AT5G54160 | 50.729 | 3.12e-129 | 372 |