Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele40g0139 ATGCACGATTCAGTAATGGGGAAGAAGAAGGGAGGTAGCTCTTGGTTGAGTGCCGTGAAAAGGGCATTCAGATCTCCAACCAAAGACCAAATCGACGAAGACAAGAAAAGAGAAAAACGAAGATGGATCTTCAGAAAACCGGTGATAAACCAAGAATCACCGAGTTCCCAACAAACCCCAGCAGAGCAGAAGCCTGATGCAGCCGAGGCAGTCACAGATCAAAAGCACGCTCTGGCTGTAGCGGTCGCCGCCGCCGAGGCCGCCATGGCCACAGCTCAGGCGGCTGTAGAAGTGGCCAGACTTACCATACCACCCAATCATACTAAAGAACACTATGCTGCTATAGTGATTCAAACAGCTTTCAGAGGATACATAGCAAGAAGGGCTCTTCGGGCGCTGAAGGGGCTGGTGAAATTGCAAGCGTTAGTAAGGGGTCACAATGTTCGGAAGCAAGCGAAGATGACACTTCGGTGCATGCAGGCTCTGGTGAGAGTCCAATCTCGGGTGGTTGATCGGCGCGTGAGGCTGTCATACGACGGAAGCAGTAGAAAATCCACGTTCAGTGACTCCAATAGCCTCTTGAAATCGCGTTATCTTCAGGATATCTCAGACAGAAGATCAATGCAGTCAAGAGAAGGAAGCAGAGTTGCAGACGATTGGGATGAAAGGGCGCACACAGTTGAAGAAATTAAAGAAATATTGAGGCAGAGGAAGGATGCAGCTTTGAAACGAGACAAGCCCTTGTCTCAAGTTTTCTCTCAACAGGTCTGGAGAAGCGGAAGAAGGCCGTCGATTGGGAATGAAGAGGAACTGGAGGAGAGGCCGGCGTGGCTAGAGCGGTGGATGGCGGTGAAGCCATGGGAGAGAAGGGGAAGAGCTTCAGTTGATCAAAGAGAAACGATCAAGACGGTAGAAATGGACACAAGTCGTCCTTACACATCATATGTAGGATCTAACTACAGAAAATCACACCCAAATTATCAATATAACCCACACCAACACCAACCTCAAAGAAACTCTGTAGCTTCTCCATTCCACAGATCATCGTCATCGTCTCTTCACCATTCCCCCGCAACCCCATCTCCCCCAAAATCCCGGCCGGTCCAGGTCAGGTCGGCGAGCCCTCGCTGTGGAAGAGAAGATAGAAGCTTCCACAGTACATCCCAAACACCAAGCTTAAGGTCCAACTATCATTACACAGGAAGATGTGGAAGCAGCGGCAGCAGCAACAATGGTGGTGGTGGTTCATTGCCTAATTACATGGCGGCAACCGAGTCTGCGAAGGCGAGGATCCGGTCTCTGAGCTCGCCGAGGCAGAGGCCTTGGACATCAGAGAGAGACAGATCAGTCAGATCAGCAAAGAAGAGGCTTTCTTTCCCTGCTCATCCTGGAGATGCGTATGGGTATGGTCATGGCGGTTATAGCAGTTATGCGCATAGTCTAAGGAGTTCAAGCTTCAAGAGTATGTGTGGATCACAGTATGGAGTGGATCAAGCTTCCATATATTCTTCTTGCTGCCCGGAGAGCCTTAATGCTGCTGCTGCTATTGATGTTGCAACTAGGAAAGTGTTTTGA 1575 0.4984 MHDSVMGKKKGGSSWLSAVKRAFRSPTKDQIDEDKKREKRRWIFRKPVINQESPSSQQTPAEQKPDAAEAVTDQKHALAVAVAAAEAAMATAQAAVEVARLTIPPNHTKEHYAAIVIQTAFRGYIARRALRALKGLVKLQALVRGHNVRKQAKMTLRCMQALVRVQSRVVDRRVRLSYDGSSRKSTFSDSNSLLKSRYLQDISDRRSMQSREGSRVADDWDERAHTVEEIKEILRQRKDAALKRDKPLSQVFSQQVWRSGRRPSIGNEEELEERPAWLERWMAVKPWERRGRASVDQRETIKTVEMDTSRPYTSYVGSNYRKSHPNYQYNPHQHQPQRNSVASPFHRSSSSSLHHSPATPSPPKSRPVQVRSASPRCGREDRSFHSTSQTPSLRSNYHYTGRCGSSGSSNNGGGGSLPNYMAATESAKARIRSLSSPRQRPWTSERDRSVRSAKKRLSFPAHPGDAYGYGHGGYSSYAHSLRSSSFKSMCGSQYGVDQASIYSSCCPESLNAAAAIDVATRKVF 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele40g0139 524 SMART iq_5 132 153 IPR000048 GO:0005515
Lele40g0139 524 SMART iq_5 109 131 IPR000048 GO:0005515
Lele40g0139 524 MobiDBLite consensus disorder prediction 301 457 - -
Lele40g0139 524 MobiDBLite consensus disorder prediction 306 359 - -
Lele40g0139 524 Pfam Protein of unknown function (DUF4005) 374 470 IPR025064 -
Lele40g0139 524 Gene3D - 107 162 - -
Lele40g0139 524 MobiDBLite consensus disorder prediction 25 46 - -
Lele40g0139 524 MobiDBLite consensus disorder prediction 49 63 - -
Lele40g0139 524 ProSiteProfiles IQ motif profile. 110 138 IPR000048 GO:0005515
Lele40g0139 524 FunFam IQ-domain 11 109 160 - -
Lele40g0139 524 PANTHER IQ-DOMAIN 5-RELATED 6 461 - -
Lele40g0139 524 Pfam IQ calmodulin-binding motif 137 153 IPR000048 GO:0005515
Lele40g0139 524 Pfam IQ calmodulin-binding motif 113 131 IPR000048 GO:0005515
Lele40g0139 524 ProSiteProfiles IQ motif profile. 134 161 IPR000048 GO:0005515
Lele40g0139 524 MobiDBLite consensus disorder prediction 1 70 - -
Lele40g0139 524 MobiDBLite consensus disorder prediction 384 417 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele40g0139 Lele-ChrLele40 1067308 1071675 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele40g0139 6 509 IQD Protein Family AT1G01110 53.818 4.26e-154 449