Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele40g0137 ATGTCAGAAGGTGCGGAAGTTGATGAGCGTGTGGACTTTGATGAGGAAAACTACATGGAAGAGATGGAAGATGATGTGGAAGAACAAATATATGATGAGGGACTGGATGGAGGTGGTGATGAAAATGAAGAGAATGTTGAGGAACATGAATATGAAGATTCAGTAGCAGAACCTTGTGGGAAAGACCAATATCCCGAAGCAGATGGAAGTGACGTTACTGACTCTGTGGAAAATGAGCAAAAGCCATTTTCTATTGATGAAAATGAGAAGGAGAAACACGATGAACTTCTCGCGCTTCCTCCTCATGGTTCTGAAGTCTTTATTGGTGGACTTCCTCGGGATACATGTGAAGATGATTTAAGAGAAATATGCGAGCAAATCGGTGATATTCTTGAGGTGAGACTTATGAAAGATAGGGATACAGGAGATGTTAAAGGCTATGCTTTTGTGGCATTTAGAACAAAAGAGATTGCACAAAAGGCCATTGAAGAGTTACATAACAAGGAATTTAAGGGCAAAACTTTAAGGTGTTCCGTGTCTGAAACAAAACACAGATTGTTTATTGGTAATGTTCCAAAAAACTGGACAGAGGATGAGTTCAGGAAAGTCATCATGGGCGTTGGTCCTGGAGTTGAAAATATTGAGCTGATAAAGGACCCCCAAAATGCAAGCAGGAACCGTGGGTTTGCTTTTGTATTGTATTATAATAATGCCTGTGCTGATTATTCTCGGAAAAAGATGTCAAGTGCAAACTTTAAGCTGGATGGCAATACCCCCACAGTCACTTGGGCAGATCCAAAGAATGCACCTGATCATTCGGCTTCCTCACAGGTTAAAGCTCTTTATGTGAAAAACATACCTGAGAATACTACTACTGAACAACTGAAGGAACTGTTCTGTCGACACGGAGAAGTAACAAAAGTGGTCATGCCTCCTGGTAAAGCTGGAGGCAAACGTGACTTTGGTTTCATTCATTATGCAGAGAGGTCGAGTGCATTAAAGGCAGTAAAAGAGACAGAAAAATATGAAATAGACGGCCAAGCGTTGGAAGTTGTTCTAGCAAAGCCTCAAACTGAGAAAAAAACTGATGGGGGTTATGCCTACAATCCTGGGCTTCATCCACATCCTGGCTATGGTGGTTTCTCCGGAAATCTGTATGGTTCTTCTGTGCGTCCTGGATATGGCGGCGTTACCGGTGGTTATCAACAACCGGTGATATATGGTAGGGGTCCAATGCCAGCAGGAATGCAGATGGTTCCAATGGTATTACCCGATGGTCGTATCGGCTATGTCCTTCAACAGCCTGGCGCTCAGATGTCGTCTCCCCGACCCCAGAGGAACAGTGGTCGGAGCAGTCAGCCCGGGCGAGGGGGAGGCAGCAGCAATGACGAGGGCAATCGCAGTAGAAGGTATCGACCTTATTAA 1425 0.4421 MSEGAEVDERVDFDEENYMEEMEDDVEEQIYDEGLDGGGDENEENVEEHEYEDSVAEPCGKDQYPEADGSDVTDSVENEQKPFSIDENEKEKHDELLALPPHGSEVFIGGLPRDTCEDDLREICEQIGDILEVRLMKDRDTGDVKGYAFVAFRTKEIAQKAIEELHNKEFKGKTLRCSVSETKHRLFIGNVPKNWTEDEFRKVIMGVGPGVENIELIKDPQNASRNRGFAFVLYYNNACADYSRKKMSSANFKLDGNTPTVTWADPKNAPDHSASSQVKALYVKNIPENTTTEQLKELFCRHGEVTKVVMPPGKAGGKRDFGFIHYAERSSALKAVKETEKYEIDGQALEVVLAKPQTEKKTDGGYAYNPGLHPHPGYGGFSGNLYGSSVRPGYGGVTGGYQQPVIYGRGPMPAGMQMVPMVLPDGRIGYVLQQPGAQMSSPRPQRNSGRSSQPGRGGGSSNDEGNRSRRYRPY 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele40g0137 474 CDD RRM_SF 106 178 - -
Lele40g0137 474 Gene3D - 8 184 IPR012677 -
Lele40g0137 474 Gene3D - 185 265 IPR012677 -
Lele40g0137 474 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 184 266 IPR000504 GO:0003723
Lele40g0137 474 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 279 356 IPR000504 GO:0003723
Lele40g0137 474 MobiDBLite consensus disorder prediction 434 462 - -
Lele40g0137 474 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 185 265 - -
Lele40g0137 474 Gene3D - 267 403 IPR012677 -
Lele40g0137 474 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 104 182 IPR000504 GO:0003723
Lele40g0137 474 MobiDBLite consensus disorder prediction 8 51 - -
Lele40g0137 474 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 281 349 IPR000504 GO:0003723
Lele40g0137 474 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 106 176 IPR000504 GO:0003723
Lele40g0137 474 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 186 252 IPR000504 GO:0003723
Lele40g0137 474 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 12 463 - -
Lele40g0137 474 SUPERFAMILY RNA-binding domain, RBD 185 271 IPR035979 GO:0003676
Lele40g0137 474 SMART rrm1_1 280 352 IPR000504 GO:0003723
Lele40g0137 474 SMART rrm1_1 105 178 IPR000504 GO:0003723
Lele40g0137 474 SMART rrm1_1 185 262 IPR000504 GO:0003723
Lele40g0137 474 MobiDBLite consensus disorder prediction 431 474 - -
Lele40g0137 474 CDD RRM3_hnRNPR_like 278 356 - -
Lele40g0137 474 MobiDBLite consensus disorder prediction 1 90 - -
Lele40g0137 474 FunFam Heterogeneous nuclear ribonucleoprotein Q isoform A 8 184 - -
Lele40g0137 474 SUPERFAMILY RNA-binding domain, RBD 101 358 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele40g0137 Lele-ChrLele40 1043513 1048186 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele40g0137 106 422 Eukaryotic Initiation Factors Gene Family AT4G34110 26.016 1.50e-14 74.3