Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele40g0130 ATGGACGATCTCATCCTCTCCCCTTCTTCCCCTTCCTCCCTCCTCTCCTTCTCTTACTCTCCGCTGCCGCCTCCTCCTTCTCCTTCCACCTCTCCTCTTCAAAACAAGCTTCAATTCTTACTTCAGTCCCAGCCTCGCTCCTGGCTCTACGCCATTTTCTGGCAAACCTCCCACGACGACAGCAACCGCCTCCGCTTGTCCTGGGCCCATGGTCACTTCCATGGCTCCGATCATCGTCCCCGTCCCAACAACTTCATCAAAGGTCTTGAATCTTTCGTCGACGACAACCTAAATGATGCTGAGTGGTTCTATGTCATGTCCTTGACTCGCACTTTCTCCCTCGCTCCTGATTCCTCCTCCTCCTCCTCCCTCCCCGCCAAGGCTTTCTCCTCCGCTTCTCCCCTCTGGTTGAATATCAACCACCACGAGCTTCAGTTTCAGTGTTGCGACAGAGCCAAAGAAGCTTCCCTGCATGGGATTCGAACCCTGATCTATGTTCCCACCACTCACGGAGTTGTCGAAATGGGTTCCTCTGAGATCATCCCCAAGAGCTCCAGTCTCATCCAGCAACTTAAATCTCTGTACGGCTCCTCGGATCTCACCGCCATCATCTCACCCTCTAATAAGCAACCCGAACCGGTTGATTTCTTGGGCGTCGACGAGACCATCTCTTTTGCCGACATAGGCATTATCCCCGGCGCACCGGAAGTAGCAGTTGAAAAGGCACCGGGCAACTCCTGTAGTAAATCCCTAAAGAAAGATCACCTTCTGCCCCTCAGGTCGTACGTGGACTCAGAGCATTCACATTCGGATTCCGACTGTCCGATAATAGAGAAGACACCGCCCAAGAAGAGAGGAAGAAAGCCCGGACTGTGTCGCGAGACGCCGCTAAACCACGTGGAAGCCGAGCGGCAACGCCGGGAAAAGCTGAACCACCGGTTCTACGCGCTACGCGCAGTGGTCCCGCATGTCACGAGGATGGACAAGGCTTCGCTGTTATTGGACGCCGTCTCTTACATCAACGAGCTCAAAGCCAAGATCGAGAAACTGGGGTCACAGCTTCAGAGGGATCCCAACTATATGAACAGGTGCAGGAAGGTGAAGCTGGAAGACACGATGGAATCGACGGTGGAGCAGGACGGCCCCAACGGGCGAGGGTTCAGGCGGGGGCTGGGGCTTGGCGGGCTGGAGGTTGACGTCAGAATCATAGGACCGGACGCGATGATCAGAGTTCAGTCGGAGAACAGGAACCATCCCGGAGCAAGGCTGATGGACGCGCTGCAAGACTTGGAGCTTAGGGTGCACCAGGCGAGCATGTCATGCGTCAACGAAGTCATGCTTCAAGACGTCGTCGTTAAGATCCCTCAAGGCATGAAAAGCGACGAAAGGTTGATTAAATCTGCTATTCTCAGGAGATTGGATCAGTAG 1428 0.5455 MDDLILSPSSPSSLLSFSYSPLPPPPSPSTSPLQNKLQFLLQSQPRSWLYAIFWQTSHDDSNRLRLSWAHGHFHGSDHRPRPNNFIKGLESFVDDNLNDAEWFYVMSLTRTFSLAPDSSSSSSLPAKAFSSASPLWLNINHHELQFQCCDRAKEASLHGIRTLIYVPTTHGVVEMGSSEIIPKSSSLIQQLKSLYGSSDLTAIISPSNKQPEPVDFLGVDETISFADIGIIPGAPEVAVEKAPGNSCSKSLKKDHLLPLRSYVDSEHSHSDSDCPIIEKTPPKKRGRKPGLCRETPLNHVEAERQRREKLNHRFYALRAVVPHVTRMDKASLLLDAVSYINELKAKIEKLGSQLQRDPNYMNRCRKVKLEDTMESTVEQDGPNGRGFRRGLGLGGLEVDVRIIGPDAMIRVQSENRNHPGARLMDALQDLELRVHQASMSCVNEVMLQDVVVKIPQGMKSDERLIKSAILRRLDQ 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele40g0130 475 Pfam Helix-loop-helix DNA-binding domain 298 343 IPR011598 GO:0046983
Lele40g0130 475 Gene3D - 294 368 IPR036638 GO:0046983
Lele40g0130 475 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 294 343 IPR011598 GO:0046983
Lele40g0130 475 PANTHER MYC 27 472 IPR045084 GO:0003700|GO:0006355
Lele40g0130 475 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 296 358 IPR036638 GO:0046983
Lele40g0130 475 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 33 194 IPR025610 -
Lele40g0130 475 MobiDBLite consensus disorder prediction 270 289 - -
Lele40g0130 475 SMART finulus 300 349 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele40g0130 Lele-ChrLele40 1001544 1002971 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele40g0130 1 475 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G17880 32.877 2.07e-83 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele40g0130 bHLH-MYC_N 4.6e-36 CL0161