Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele40g0117 ATGGGAAGAGCTCCTTGCTGTGCAAAAGTAGGGTTGCACAGAGGTCCTTGGACTCCTAAAGAAGACGCATTGCTCACCAAGTACATACAAACTCATGGTGAAGGCCAATGGCGTTCCTTACCTAAACGAGCTGGGCTTTTGAGGTGTGGAAAGAGTTGCAGGCTGAGATGGATGAACTATCTGAGACCAGACATAAAGAGAGGAAATATAACACCAGAAGAAGAAGATCTCATAATCAGAATGCATTCTCTTCTGGGGAATCGATGGTCTCTCATTGTGGGAAGATTGCCTGGGAGAACAGATAACGAAATCAAGAACCACTGGAACACACATCTCAGCAAAAGGCTAAGGAATCAAGGAACCGACCCAATCACTCACAAGAAGCTCTCCTCCCTGCTACCTAATAATAATAACAGTTCCAAGAAGAAAGCGAGTAAGAAGAAGAAGAAAGGGAAGGTGCGTGGGAATAACGGAGAACGAGAAGAGAAAGACGAAGAGAAGAAGACGATAGTGTATCTGCCGAAGCCAATCAGAATCACGGCCTGTTTGTCTTCTCCGATTCCCAGAAGTGACAGTAACCAGAACTTGAATTCGTTCGATTCCAACTCAGCAAGTGGATCTACAAGCCAAGAGAAAGAGGAAGAAGAGAAGAAAGGGAACGTTGATTGGGGAGAGAATAATGATAATAATAATTATTGTAATTACTATGATTATAACTATACTTATGGTGGTGACGAAGAAGATCGTAATAATGGGTTTGTGGGAAAGTTCCTTGAGGAAGATCACGAGTTGGTCAACCGGTCTGACGTGGAGGGGCAATCGGAGTTTCCGACATCGGTGGAGCAACACGGGACGCTGGAGAAGCTGTACGAGGAATACTTCCAGCTGTTGAATAACAAAGAAAACCAAGAGGAGCTAGAATCTTTTGCTGAATCCTTGCTGGTCTGA 948 0.4441 MGRAPCCAKVGLHRGPWTPKEDALLTKYIQTHGEGQWRSLPKRAGLLRCGKSCRLRWMNYLRPDIKRGNITPEEEDLIIRMHSLLGNRWSLIVGRLPGRTDNEIKNHWNTHLSKRLRNQGTDPITHKKLSSLLPNNNNSSKKKASKKKKKGKVRGNNGEREEKDEEKKTIVYLPKPIRITACLSSPIPRSDSNQNLNSFDSNSASGSTSQEKEEEEKKGNVDWGENNDNNNYCNYYDYNYTYGGDEEDRNNGFVGKFLEEDHELVNRSDVEGQSEFPTSVEQHGTLEKLYEEYFQLLNNKENQEELESFAESLLV 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele40g0117 315 Gene3D - 69 152 - -
Lele40g0117 315 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lele40g0117 315 MobiDBLite consensus disorder prediction 209 223 - -
Lele40g0117 315 MobiDBLite consensus disorder prediction 113 140 - -
Lele40g0117 315 FunFam Myb transcription factor 11 67 - -
Lele40g0117 315 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lele40g0117 315 MobiDBLite consensus disorder prediction 110 167 - -
Lele40g0117 315 Coils Coil 286 306 - -
Lele40g0117 315 MobiDBLite consensus disorder prediction 183 226 - -
Lele40g0117 315 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 227 - -
Lele40g0117 315 SMART sant 66 114 IPR001005 -
Lele40g0117 315 SMART sant 13 63 IPR001005 -
Lele40g0117 315 CDD SANT 71 112 IPR001005 -
Lele40g0117 315 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lele40g0117 315 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Lele40g0117 315 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lele40g0117 315 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lele40g0117 315 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Lele40g0117 315 MobiDBLite consensus disorder prediction 185 208 - -
Lele40g0117 315 Gene3D - 14 66 - -
Lele40g0117 315 FunFam MYB transcription factor 68 129 - -
Lele40g0117 315 CDD SANT 16 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele40g0117 Lele-ChrLele40 859427 860549 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele40g0117 4 131 MYB Transcription Factor Family AT3G13540 71.875 1.32e-67 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele40g0117 Myb_DNA-binding 7.2e-14 CL0123