LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele40g0108	ATGGAGCCAACACCTCCCTGCACTCGCGACGATGACCTAACGGCCTCCGTCTCCTCCGCCGCCATTCAGCCTGTTGACAAATCTGATAACTCACGAGTCGGAGGCACGCGCCACCCAGTCTACCGGGGCGTCCGTAAGCGGCGGTGGGGTAAATGGGTATCGGAAATCCGGGAGCCGCGCAAGAAATCGCGAATATGGTTGGGCTCATTTCCTGTGCCGGAGATGGCAGCGAAGGCATATGACGTGGCGGCGTACTGCCTGAAAGGCAGGAAAGCGCAGCTCAATTTCCCCGACGAGGTCGAGCACCTGCCGCGGCCCTCCGCATGTGCCGCCAGAGATATCCAGGAGGCAGCAGCTAAGGCGGCTCATGCAATGAAAGCCTCCACGAAGAAGAACGGAGTCATGTCTGACAGATACGGCGACGGCGACAGCGGGGGAGATGATTTTTGGGGCGAGATTGAATTGCCAGAGCTGATGAACAGCGAGTGTTTCAGGAGTTCTCCGAGTGGCTCATCGTGGGCTCCTTCCGGTGACATCACTGCGTGGCAGGAGATGGAGCTTCCGTCGCAGCAGCAACCGTTCATGGCGTGCTTATAA	597	0.5896	MEPTPPCTRDDDLTASVSSAAIQPVDKSDNSRVGGTRHPVYRGVRKRRWGKWVSEIREPRKKSRIWLGSFPVPEMAAKAYDVAAYCLKGRKAQLNFPDEVEHLPRPSACAARDIQEAAAKAAHAMKASTKKNGVMSDRYGDGDSGGDDFWGEIELPELMNSECFRSSPSGSSWAPSGDITAWQEMELPSQQQPFMACL	198

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele40g0108	198	PRINTS	Ethylene responsive element binding protein signature	79	99	IPR001471	GO:0003700\|GO:0006355
	Lele40g0108	198	PRINTS	Ethylene responsive element binding protein signature	41	52	IPR001471	GO:0003700\|GO:0006355
	Lele40g0108	198	SUPERFAMILY	DNA-binding domain	40	99	IPR016177	GO:0003677
	Lele40g0108	198	Gene3D	AP2/ERF domain	40	98	IPR036955	GO:0003700\|GO:0006355
	Lele40g0108	198	Pfam	AP2 domain	39	89	IPR001471	GO:0003700\|GO:0006355
	Lele40g0108	198	PANTHER	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED	27	162	-	-
	Lele40g0108	198	MobiDBLite	consensus disorder prediction	1	38	-	-
	Lele40g0108	198	FunFam	Ethylene-responsive transcription factor 2	39	98	-	-
	Lele40g0108	198	SMART	rav1_2	40	103	IPR001471	GO:0003700\|GO:0006355
	Lele40g0108	198	MobiDBLite	consensus disorder prediction	11	30	-	-
	Lele40g0108	198	CDD	AP2	41	98	IPR001471	GO:0003700\|GO:0006355
	Lele40g0108	198	ProSiteProfiles	AP2/ERF domain profile.	40	97	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele40g0108	Lele-ChrLele40	774576	775172	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele40g0108	36	198	AP2-EREBP Transcription Factor Family	AT1G01250	64.671	3.70e-59	182

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Lele40g0108		AP2	2e-13	CL0081