Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele40g0107 ATGGTTGCATCGGTTCTGGGAAATCGAGCTTTTGAATACTTGATTTCAAACCCTGTGGCGAATGACAATTTGTTAATGACAGTCGGAAGCCACGAAAGTTTGCAGAACAAGCTTTCGGATCTCGTGGACCGTCCAAAAGTATCGAATTTCAGTTGGAACTATGCGATTTTCTGGCAAATATCACAGTCGAAGAAATCTGGGGATTGGGTTTTGGGTTGGGGAGATGGATGTTGCAGAGAACCCAAGGGAGGAGAAGAAGAAGGTGGAGTTAGAGGGCTTCTTACTTTTTGCCTGGAAAAAGATGAGATGCAGCAGAGGATGAGGAAAGGGGTTCTTCAGAAGCTTCACACAACATTTGGGGGTTCTGATGAAGACAATTATGCCTTTGGGTTAGATAGGGTTACTGATACAGAGATGTTCTTTCTGGCGTCCATGTACTTCTCCTTCCCTCGCGGCCATGGCGGGCCTGGTAAATGCCTTGCTTCAGGGCAGCATGTGTGGTACTCTGATGCACTTAGCTCTGATTACTGTGTGAGATCATTTTTGGCAAAATCAGCTGGAATTCAGACCATAGTTTTGGTCCCTACTGACATTGGAGTGGTGGAATTGGGTTCTGTGAGGATGGTAGGAGAGAGTTCAGAATTATTGCAGGTGATAAAATCAGAATTTTCGACGCAAATGTCAACTCCTAGGGTTTCCCCACTTTCACCATTGCCCGTTGCAGTGGATGAGAAGAGAGATGAAAATGGTATCTTTTCTGGTTTGCCTGTTGGGGATAAGGTGGAGGGAGTTCCGAAGATTTTTGGGCAGGACTTGACCTCGTTAAACTCTGGACGTCCCCATTTTAGGGAGAAGCTTGCTGTGAGGAAAATGGAGGAGAGGCCTTCTTGGGCAGGTCACAGCCAGCCCAATGGCAGCAGTATTAGCTTTCCAAGTGCACGGAATGGTATTCATGGATCGAGTTGGGCGGCTAATCAAGGTGGGAAACAGGCAAGCTCAACGGAGATTTATCCTTCAAGGTCCTCAGGTTGCAATGCACCAGAGGGAGTTAACCAATTCAAGCAAAACTTTCGGCTTAGCAGCTACCAACCACAAAGGCAGGTGCAAATGCAAATTGATTTCTCTGGAGCTACTTCACAGCCTTCTTTGAGACCAATCAATGCTGAATCAGAGCTATCTGATGTTGAAGCTTCATGCAAAGAAGAGCAGCTGGGTGTAATAGATGAGAGGAGACCGAGGAAACGGGGTAGAAAGCCTGCCAATGGAAGGGAAGGACCCTTGAATCACGTGGAAGCGGAGAGGCAGAGGCGTGAGAAGCTGAATCAGCGGTTCTATTCTCTTAGATCTGTTGTACCCAATATATCCAAGATGGACAAGGCTTCTTTGCTGGGAGATGCCATTGCTTATATCCATGAGCTTCAAGCAAAACTCAAGATCATGGAATCTGAGAGAGATCGATCTGGAAGCACTTCAAGGGATGTTCCAACATTAGTGGCTGATCCAAAAGTAGAAAATCACAATCAAGCTACCGATGTTGATATTCAAGTTACCCAGGATGAGGTAATAGTGAGGGTGAGCAGCCCTCTCAATGATCATCCTATTTCAAGAGTTCTCCAAAAGTTCAAAGATGCACAAATTAGTGTTGTTGAGTCGAAGTTTGCAACTGCAAATGACACCATCTTCCATTCATTTGTAATCAAGTCCCAAGGATCTGAGCAGCTGACGAAGGAGAAGTTGATTGCAGCATTTTCTTGA 1755 0.457 MVASVLGNRAFEYLISNPVANDNLLMTVGSHESLQNKLSDLVDRPKVSNFSWNYAIFWQISQSKKSGDWVLGWGDGCCREPKGGEEEGGVRGLLTFCLEKDEMQQRMRKGVLQKLHTTFGGSDEDNYAFGLDRVTDTEMFFLASMYFSFPRGHGGPGKCLASGQHVWYSDALSSDYCVRSFLAKSAGIQTIVLVPTDIGVVELGSVRMVGESSELLQVIKSEFSTQMSTPRVSPLSPLPVAVDEKRDENGIFSGLPVGDKVEGVPKIFGQDLTSLNSGRPHFREKLAVRKMEERPSWAGHSQPNGSSISFPSARNGIHGSSWAANQGGKQASSTEIYPSRSSGCNAPEGVNQFKQNFRLSSYQPQRQVQMQIDFSGATSQPSLRPINAESELSDVEASCKEEQLGVIDERRPRKRGRKPANGREGPLNHVEAERQRREKLNQRFYSLRSVVPNISKMDKASLLGDAIAYIHELQAKLKIMESERDRSGSTSRDVPTLVADPKVENHNQATDVDIQVTQDEVIVRVSSPLNDHPISRVLQKFKDAQISVVESKFATANDTIFHSFVIKSQGSEQLTKEKLIAAFS 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele40g0107 584 MobiDBLite consensus disorder prediction 408 434 - -
Lele40g0107 584 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 424 473 IPR011598 GO:0046983
Lele40g0107 584 Pfam Helix-loop-helix DNA-binding domain 428 474 IPR011598 GO:0046983
Lele40g0107 584 MobiDBLite consensus disorder prediction 299 349 - -
Lele40g0107 584 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 427 487 IPR036638 GO:0046983
Lele40g0107 584 MobiDBLite consensus disorder prediction 293 349 - -
Lele40g0107 584 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 34 223 IPR025610 -
Lele40g0107 584 Gene3D - 419 488 IPR036638 GO:0046983
Lele40g0107 584 SMART finulus 430 479 IPR011598 GO:0046983
Lele40g0107 584 PANTHER MYC 23 582 IPR045084 GO:0003700|GO:0006355
Lele40g0107 584 CDD bHLH_AtAIB_like 421 486 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele40g0107 Lele-ChrLele40 757392 759146 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele40g0107 1 584 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G01260 50.245 0.0 523
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele40g0107 bHLH-MYC_N 7.5e-52 CL0161