Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele40g0090 ATGGCTGATTCTGGTGACCTTCCGAAATCTGCTGAAAATCAACAATCCGAGCAAGTGTGTAATTTCTTCAAGAAACCGGTTAATAGGAAGAATTTAAGAAAGCGTATTGTTGATGAAGAAGATAACGAGGAGGATTCAAAAATTGAAAGCTCTTTGTTACACATTCAGAAAAAACAGGTGAAGCCTGACAATAAGTTGTACTTTTCCACTGGTCCCTCAAAAAGCACTGCATCTAAAGTACAAGAGCAGCCTGAAAAGAAACTGTTTCATTTCGAGTCTTCAAAAGAGATTCAGGTTCAACATGATAACAAAGCAACAGCCACTCTTGAGACTGAAACCCATTTTTCAAGAGACGCTCGAGCTATTCGTGAAAGAGCCCTTAAGCAAGCAGAGGAGAGTTTGAAGGGTAAAGGCGCTAGTTCTGGAGAAGAAAAATTGTACAAGGGCATCAATAGTTACAAAGATTACAAGGCTGGCTTTCGTCGAGAGCAAACAATTGCTAGTGAAAAAGCTGGCGGGGCCCATGGTCCACTTAGGGCATCGGCTCATATAAGAGTTTCAGCAAGATTTGATTATCAGCCAGACATATGTAAGGATTACAAGGAGACTGGTTACTGTGGGTATGGTGATTCGTGTAAGTTTATGCATGATCGAGGAGATTACAAGTCTGGGTGGCAAATGGAGAAGGAATGGGAGGAAGCTGAGAAAGCTAGGAGAATGAGATTGGCTGCAGGAGAGGATTCAGATGAGGAGGGTGCTAACGTGAGTGATGAAGATGATGATGATTCATTACCATTTGCATGTTTTATTTGTAGGGAGCCCTTTGTGGATCCTGTTGTAACAAACTGCAAGCACTACTTCTGCGAGCATTGTGCATTGAAGCATCATTCAAAGAATAAGAAATGTTTTGTGTGCAACAAGCCTACTCTTGGCATTTTTAATGCAGCTCATGAGATACGCAAGAAGATGGCTGCAGAGGTTTTGTTAACCTCTTACTGTAGACATGGGATTTCAACTATGTTGCCTAACCTTTTGGATGGCTTGGATGCAGTTCATAGTTTTCTGGCTTCATCACTCGACAGTGGCCACAATTCATTAGTCCCCTGCCTCCTTATTCTTGGGACAGCTCTTGAATGGTTTCTTAAGAATAAGGCATCATTGACAGCTTCTAGGCTTTTGCAGGATCCCATATTCTAA 1197 0.4185 MADSGDLPKSAENQQSEQVCNFFKKPVNRKNLRKRIVDEEDNEEDSKIESSLLHIQKKQVKPDNKLYFSTGPSKSTASKVQEQPEKKLFHFESSKEIQVQHDNKATATLETETHFSRDARAIRERALKQAEESLKGKGASSGEEKLYKGINSYKDYKAGFRREQTIASEKAGGAHGPLRASAHIRVSARFDYQPDICKDYKETGYCGYGDSCKFMHDRGDYKSGWQMEKEWEEAEKARRMRLAAGEDSDEEGANVSDEDDDDSLPFACFICREPFVDPVVTNCKHYFCEHCALKHHSKNKKCFVCNKPTLGIFNAAHEIRKKMAAEVLLTSYCRHGISTMLPNLLDGLDAVHSFLASSLDSGHNSLVPCLLILGTALEWFLKNKASLTASRLLQDPIF 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele40g0090 398 PANTHER ZINC FINGER PROTEIN 183 15 326 IPR039971 -
Lele40g0090 398 FunFam Zinc finger CCCH domain-containing protein 1 189 223 - -
Lele40g0090 398 MobiDBLite consensus disorder prediction 8 22 - -
Lele40g0090 398 MobiDBLite consensus disorder prediction 64 83 - -
Lele40g0090 398 SMART c3hfinal6 191 218 IPR000571 GO:0046872
Lele40g0090 398 MobiDBLite consensus disorder prediction 1 22 - -
Lele40g0090 398 SUPERFAMILY RING/U-box 267 310 - -
Lele40g0090 398 ProSiteProfiles Zinc finger C3H1-type profile. 191 219 IPR000571 GO:0046872
Lele40g0090 398 Pfam Zinc finger, C3HC4 type (RING finger) 267 309 - -
Lele40g0090 398 Gene3D - 189 223 - -
Lele40g0090 398 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 266 325 IPR013083 -
Lele40g0090 398 ProSitePatterns Zinc finger RING-type signature. 283 292 IPR017907 -
Lele40g0090 398 SUPERFAMILY CCCH zinc finger 190 222 IPR036855 GO:0046872
Lele40g0090 398 FunFam RING finger protein 113A 266 325 - -
Lele40g0090 398 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 192 217 IPR000571 GO:0046872
Lele40g0090 398 MobiDBLite consensus disorder prediction 240 260 - -
Lele40g0090 398 CDD RING-HC_RNF113A_B 266 306 - -
Lele40g0090 398 SMART ring_2 268 305 IPR001841 -
Lele40g0090 398 ProSiteProfiles Zinc finger RING-type profile. 268 306 IPR001841 -
Lele40g0090 398 Coils Coil 29 49 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele40g0090 Lele-ChrLele40 657367 660515 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele40g0090 1 326 C2H2 Transcription Factor Family AT1G01350 67.857 1.46e-168 473
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lele40g0090 zf-C3HC4_3 1.3e-08 CL0229