Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele40g0056 ATGGATAATCCTTCGCTTCTCCAGTCCTCAACGTCGTCGTTTATTGGTCAATTTCGAGTCTTTCCGGCCCCATTGTCCTCCGGACTTCTCTACAGAAATGGGAATGCAGGCGTGGTGGCGCCAGTGAAGGCCACTGCTTCTGAGTCCGGGGTTGTATTGGTGGAGAAGTCTGAGGCAGAGAAACCCCACCGGCTCAAAATAACTTACACTGAGAAAATTGTCCCTAAAATTGAGAAGCTCGTTGTTAATTGCGGTATCGGAGATGCTGCACAAAATGCAAAGGGTTTGGAGGCAGCAATGGATGATCTAGCACTCATCACAGGGCAGAGGCCTGTTAAGATACGGGCGAGGGCTTCGGTTGCCACCTTCAAGATCAGGGAAGGCCAACCCCTTGGGATTGCTGTGACAATCAGAGGAAAAATGATTTTCTCATTCCTAGACCGACTCGTCAACTTGGGGCTTCCTAGGACAAGGGATTTCCAAGGTGTCAACCCCAACAGTTTCGATGGGCACGGGAATTACAGCATCGGCATCAAGGACCAGAGTGTGTTCCCAGAAATCAGGTCTGATATCGTGAGTAAGCCTAGAGGAATGGATGTATGCATAACAACAACGGCGAAAACTGATCAAGAAGCAAGCAGATTACTGGTTCTCATGGGCATGCCATTCAGAGAGGGAGGTAGCCCTGCTACAACAATTCGCAAAAAGAAGCTGAAGTCCCACCATTTTGACTCAAAATCAAAGGGCAAAGGACGGAGGTGA 762 0.4908 MDNPSLLQSSTSSFIGQFRVFPAPLSSGLLYRNGNAGVVAPVKATASESGVVLVEKSEAEKPHRLKITYTEKIVPKIEKLVVNCGIGDAAQNAKGLEAAMDDLALITGQRPVKIRARASVATFKIREGQPLGIAVTIRGKMIFSFLDRLVNLGLPRTRDFQGVNPNSFDGHGNYSIGIKDQSVFPEIRSDIVSKPRGMDVCITTTAKTDQEASRLLVLMGMPFREGGSPATTIRKKKLKSHHFDSKSKGKGRR 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele40g0056 253 MobiDBLite consensus disorder prediction 227 253 - -
Lele40g0056 253 Pfam Ribosomal protein L5 74 126 IPR031310 -
Lele40g0056 253 SUPERFAMILY RL5-like 64 224 IPR022803 -
Lele40g0056 253 Pfam ribosomal L5P family C-terminus 130 223 IPR031309 -
Lele40g0056 253 Hamap 50S ribosomal protein L5 [rplE]. 39 225 IPR020930 GO:0003735|GO:0005840|GO:0006412
Lele40g0056 253 FunFam 50S ribosomal protein L5 55 225 - -
Lele40g0056 253 MobiDBLite consensus disorder prediction 234 253 - -
Lele40g0056 253 Gene3D - 55 225 IPR022803 -
Lele40g0056 253 PANTHER 60S RIBOSOMAL PROTEIN L11-RELATED 74 231 IPR002132 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele40g0056 Lele-ChrLele40 383518 385585 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele40g0056 76 203 Cytoplasmic Ribosomal Protein Gene Family AT5G45775 28.125 8.73e-07 46.2