Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele40g0050 ATGCCAGCAGTGATTCTATTGGTACCAGTATTGGGCAGAAAAATCGAAGATGCTTGGCAGAGTGCAGTAGAGACAGCAACGTATTCTGCACGAAAGGTTAAAGAAGCCTCTGATGAGTTGACTCCATATGCTCAAAAGTTGCTCGACTCACATCCATACCTTAATGGTGGTGTTTTTCCAGTTGGCGGTACATTGACTGCCACACTTATAGCATTGGATTGTGATGCCTCGGATTTTAAGGAAATTTCACAAATATGCTATGCAAGTGGTGTTCTGATAGCTCCAACAACTGTGGCCTCAAAATACCTTTCACAGGCTTGGAGGAGTGCAGTGATCCTTTCACTTGTGAGATTTTTATATCGATGTAAACCAAATGTCTTGGCACCTGAGGCTTGTGGTGTGGCTGTGCAATCTATTATAACTATTGGTGGTATAGGAGGAATTGCCACTGCTTTTCTTGCTAGAGACATACTTGGCAATGGATTCAGTGGGTTGTCTATGCAGTTTTCTAAGCCCTTTACAGTTGGAGATACTATAGAAGCTGGCTCGGTAGAGGGTCAGCGGGTGGAAATGGGACTTACTCCTACATCATTGCTGAATGCTGAGAAGTTCCCAGTTAGAGTGCCAAACTCACTTTTTTCTAGCCAGGTGGGCATCCCCTTGCCCTTATGCTGTATCTGCAACTATGCAATTGATTTTCAACACTTGGACATAGTTGATTGCCTAATTTATCATGTAATAGTGAATAAATCTCGTGCTCAATGCCGTGCCATCGTATCTAAAATTCCTTTGCGAATTGAGGATATAAATAAAATTCCCAGGATATCAAACGACGTCAAGAGCATGCTAAGAACAAATGCTAAGGTTTTCTTAGAGAAAGAGCGTAAAGATGAGGTGTACTCTGCAGAAAAAGATATTCTGCTGCAGGCAGCCCAGATTATAAAGATGCATGGTGCTGAACTTGGCAAAACATGGCTTGATTGCAAGAGAGAAAAAGAAGCTTCTGTCTGGAGATTAATCATTTTGTCAATTTGTTTCTTCTTAACTTCAATTATGGAAGACGTGATTTTAAATTTTGATTTCGTCTTGACTAATTCGAGTTTTGGAGTTTAG 1113 0.4106 MPAVILLVPVLGRKIEDAWQSAVETATYSARKVKEASDELTPYAQKLLDSHPYLNGGVFPVGGTLTATLIALDCDASDFKEISQICYASGVLIAPTTVASKYLSQAWRSAVILSLVRFLYRCKPNVLAPEACGVAVQSIITIGGIGGIATAFLARDILGNGFSGLSMQFSKPFTVGDTIEAGSVEGQRVEMGLTPTSLLNAEKFPVRVPNSLFSSQVGIPLPLCCICNYAIDFQHLDIVDCLIYHVIVNKSRAQCRAIVSKIPLRIEDINKIPRISNDVKSMLRTNAKVFLEKERKDEVYSAEKDILLQAAQIIKMHGAELGKTWLDCKREKEASVWRLIILSICFFLTSIMEDVILNFDFVLTNSSFGV 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele40g0050 370 Pfam Mechanosensitive ion channel 132 320 IPR006685 GO:0016020|GO:0055085
Lele40g0050 370 SUPERFAMILY Sm-like ribonucleoproteins 156 216 IPR010920 -
Lele40g0050 370 Gene3D - 172 218 IPR023408 -
Lele40g0050 370 Gene3D - 96 171 - -
Lele40g0050 370 PANTHER YNAI-RELATED MECHANOSENSITIVE ION CHANNEL 242 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele40g0050 Lele-ChrLele40 349852 352729 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele40g0050 13 325 Mechanosensitive Ion Channel Family AT4G00290 41.889 3.02e-93 286