Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele40g0047 ATGGGAGGTTGCTGCTGTTCTGCCAGAAACCCTCATCTACACGGCACACCAGTGTATTATTATTGCCCACCAGCTTTGGAAGAGCGCGAGCCATTAACCTCAAATGATGGTACGGCTGCTTCACTCGGTGCTGGATTCCTAGCAGGTTTTAACTTGGAAACATCCACACCAGATGCATACCAGCCCCCTCCTGCACCTTTGCCTTATGATGTGGACTTTGGTCCAATATCAACAGATTCTGAATCTGGAAGAAAAACAGTTGGTGGTAGCAGTTTTGAAACATTAATTACATGTGAAGATCTTGAAGAATCAGATTGCAAAGCTCAAGCAAATTCTGAACTTTTGTCTCCAAAGAAGATAGAACTATCAAAATCAAATGAATGCCATGTACTACTGACAGAAGAAGAAGAAGAAGAAGAAGAAGTCTGTCCAATTTGTCTTGAAGAATATGAGGTTGAGAATCCTAAAACTCTGACAAAGTGTGGACACCATTTTCACCTATCTTGCATTCTTCAGTGGATGGAAAGAAGTGAAACGTGTCCTATATGCGATCAGGAGATGATATTTGAGTAG 573 0.4171 MGGCCCSARNPHLHGTPVYYYCPPALEEREPLTSNDGTAASLGAGFLAGFNLETSTPDAYQPPPAPLPYDVDFGPISTDSESGRKTVGGSSFETLITCEDLEESDCKAQANSELLSPKKIELSKSNECHVLLTEEEEEEEEVCPICLEEYEVENPKTLTKCGHHFHLSCILQWMERSETCPICDQEMIFE 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele40g0047 190 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 130 188 IPR013083 -
Lele40g0047 190 SMART ring_2 143 183 IPR001841 -
Lele40g0047 190 ProSiteProfiles Zinc finger RING-type profile. 143 184 IPR001841 -
Lele40g0047 190 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 43 189 - -
Lele40g0047 190 FunFam Putative E3 ubiquitin-protein ligase RHB1A 115 188 - -
Lele40g0047 190 Pfam Ring finger domain 143 183 IPR001841 -
Lele40g0047 190 SUPERFAMILY RING/U-box 130 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele40g0047 Lele-ChrLele40 327769 328881 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele40g0047 1 190 C3H Transcription Factor Family AT4G00335 54.450 4.29e-69 207