Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele40g0045 ATGGCAAGGTGGTCGATGCCTGATGAGGCCCCATATTCATTTGAACAATTTATTGAGTTTTTTAAAGAAATATCTACCCATAATTGTTTTCGACCTATTCCACCAATGCTTGGTAATGGGCAACCAGTGGATTTAAAATCCTTATTCTTAATTGTGATAGGGAAAGGAGGGTATGATGCAGTCTCCAAAAACAATTTATGGAATTTGGAGGCCGAAAGATCTGGTTTAGGTGTGAATATTGGCTCATCAGCAAAGTTGATCTATTATAAATATTTAGGAACTTTAGAGACATGGCTCATAAAATTTTCTGAGGGTAGAGTACTTGGTTATAGTTTGTGTGATGGTGGAATCAACTTTGGTAGGCAACTGATGGAACTTCAAGCTAAAATAAAAAGGCTATTGTCAGATTATATTGTTCTGGATGGAGTAAAGAGTAAAGTTCAAGAGGATGGATTTCTTGGTTTGGATATGCCAAGAAACTTGTGCAATATTGATGACACAATGACATTGAAAGAGTATGAAGGAAGGATGATCATTGCAAAGAAGCTAGTAAATGCATTAGATGTAGGGGATTCATCTAATAATAATGAAGGGAAAAATGTGGCTAGTTCGGCTAATGGAGGAAAGAGATTTGCTAATGATGATGTCTTGATATTAGATCCACCAAATGTTAATAAGGAGAACTTTGGGCGTAAGAGGAAAAGAAAGTCTGTGCAAGAAATGCTATGTTGGGTAACTAGCATCGCAAAGAATTCATGTGATCCTATAGTTTGTTCAATACTTGAAAGATCAAAGTGGAGTTCTCAAACTTTCGAAGAGATTACGAAGCAAGTTTTGTTGTTTCGAGAGGCTGTCTTTATGAAAAGAAATGTTGAGTCAAGCAAACGACATGACGATTCGCAGGGTATGAAGCTGCATCCTCGCATGTATGATGATGATCACCCAGGAACTAAGGAAAGGTCGAATTCTGGTAACAGGAGGTTTCCAAATAAAAAGTCCGTGTCTGTTGTACCAGTCTCATCAAAAGTAGTTCCCGTAGGAACTGAATTAGGGGATTCAAGGAATGCTCCTCAAGCTCCACAAATTGAAGATCTTGCTGAGAAAACTGCACTTTCTTCAGCCCTTGATAAATTTAGCAAAACAACCGTCCCTATAGGGACAGCTCATCAGGCAAATGTACCGGAATGGACTGGTATGAATTCTGGAAGTGATCCTAAATGGTTGGGGACTCAAATATGGCCATTAAAACGTGCAAATCATAGACTTCTCATCGAAGGGGATTCCATTGGAAAGGGAAGAAATGACTTCTGCAACTGTCAAGTACCAGGATCAGTGGAGTGTGTCAAATTTCACATTGCTGAAAACAGGGAGAAAGTTAAATTGGAATTGGGTGTGGCTTTTTACCATTGGAATTTCAACATTGTTGGGGAGGAGGTTAGCCATTCTTGGACTCACGAAGAGGAGAAAAAGTTCAAGGATGTGGTGCAAGCAAACCTCAAATCACCCAAGAAATGTCTTTGGGATCGTGTTTTCAGATCCTTTCCTAAGAAAAGCCGAGAAGATTTAGTCAGCTACTACTTCAATGTTTTTGTTCTGCGACGTCGAAGATTCCAGAATCGACACTCTCCAGATAACATTGATAGTGATGATGATGTATTGGAGTCGGAACCTCTGATCAAACCCCAAGCAATGGACTCAGTTGCTAGTAAAAATAGATGTACTTATCAACCCAAATTCAATTCCTCTAGAAAATACTTTAATTTGGAGATAAATCGAAAATATAATATCGAGAGTATGAGCAAATTAATGACTGTGATGAGTTCTGACATAATCTCTGGTGTCTTGACCAAAGAGAACATACTAAGTGTCTCCCACAATCCTCCCTTCTCTCTCTCTATCAGAGTTGCTAAAGAGAAAGAAGAAAAGAAAAATCCATCCGGAAAGATGTCTTCCCCAAGCAAGCGGCGAGAGATGGACTTGATGAAACTGATGATGAGTGATTACAAGGTCGAGATGATTAACGATGGAATGCAAGAATTTTATGTTCATTTCCACGGACCCAGTGATAGTCCTTACCATGGAGGTGTGTGGAAAGTAAGAGTTGAGCTGCCAGATGCTTATCCATATAAATCTCCTTCCATAGGCTTTGTCAATAAGATTTATCACCCAAATGTTGATGAGATGTCAGGTTCGGTTTGTCTAGATGTTATTAATCAGAGCTGGAGCCCCATGTTTGATCTTGTTAATGTATTTGAGGTGTTTCTACCACAACTTCTTCTATATCCCAATCCCTCAGACCCTTTGAATGGAGAAGCCGCCGCTTTAATGATGCGTGACCGAGCTACTTATGAACGAAGGGTTAAAGAGTACTGTGAGAAGCATGCCAAGCCTGAAGACATCGGAGCTGCTACAGAAAAAATATCAAGTGATGAGGAGCTAAGTGAAGATGAATATGATTCAGGTGATGATGACCAGCTAGCCGGTGAAGCAGATCCCTGA 2499 0.397 MARWSMPDEAPYSFEQFIEFFKEISTHNCFRPIPPMLGNGQPVDLKSLFLIVIGKGGYDAVSKNNLWNLEAERSGLGVNIGSSAKLIYYKYLGTLETWLIKFSEGRVLGYSLCDGGINFGRQLMELQAKIKRLLSDYIVLDGVKSKVQEDGFLGLDMPRNLCNIDDTMTLKEYEGRMIIAKKLVNALDVGDSSNNNEGKNVASSANGGKRFANDDVLILDPPNVNKENFGRKRKRKSVQEMLCWVTSIAKNSCDPIVCSILERSKWSSQTFEEITKQVLLFREAVFMKRNVESSKRHDDSQGMKLHPRMYDDDHPGTKERSNSGNRRFPNKKSVSVVPVSSKVVPVGTELGDSRNAPQAPQIEDLAEKTALSSALDKFSKTTVPIGTAHQANVPEWTGMNSGSDPKWLGTQIWPLKRANHRLLIEGDSIGKGRNDFCNCQVPGSVECVKFHIAENREKVKLELGVAFYHWNFNIVGEEVSHSWTHEEEKKFKDVVQANLKSPKKCLWDRVFRSFPKKSREDLVSYYFNVFVLRRRRFQNRHSPDNIDSDDDVLESEPLIKPQAMDSVASKNRCTYQPKFNSSRKYFNLEINRKYNIESMSKLMTVMSSDIISGVLTKENILSVSHNPPFSLSIRVAKEKEEKKNPSGKMSSPSKRREMDLMKLMMSDYKVEMINDGMQEFYVHFHGPSDSPYHGGVWKVRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDVINQSWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRATYERRVKEYCEKHAKPEDIGAATEKISSDEELSEDEYDSGDDDQLAGEADP 832
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele40g0045 832 SUPERFAMILY UBC-like 652 796 IPR016135 -
Lele40g0045 832 MobiDBLite consensus disorder prediction 794 809 - -
Lele40g0045 832 ProSiteProfiles ARID domain profile. 7 100 IPR001606 GO:0003677
Lele40g0045 832 SUPERFAMILY ARID-like 20 104 IPR036431 GO:0003677
Lele40g0045 832 MobiDBLite consensus disorder prediction 292 334 - -
Lele40g0045 832 CDD SANT 482 530 IPR001005 -
Lele40g0045 832 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 648 796 IPR000608 -
Lele40g0045 832 Pfam Ubiquitin-conjugating enzyme 658 790 IPR000608 -
Lele40g0045 832 MobiDBLite consensus disorder prediction 810 832 - -
Lele40g0045 832 MobiDBLite consensus disorder prediction 292 326 - -
Lele40g0045 832 CDD ARID 15 96 - -
Lele40g0045 832 SMART ARID_2 5 96 - -
Lele40g0045 832 CDD UBCc 655 791 IPR000608 -
Lele40g0045 832 Pfam ARID/BRIGHT DNA binding domain 17 95 IPR001606 GO:0003677
Lele40g0045 832 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 19 572 - -
Lele40g0045 832 SMART bright_3 7 101 IPR001606 GO:0003677
Lele40g0045 832 Gene3D - 9 106 IPR036431 GO:0003677
Lele40g0045 832 MobiDBLite consensus disorder prediction 794 832 - -
Lele40g0045 832 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 721 737 IPR023313 -
Lele40g0045 832 Gene3D Ubiquitin Conjugating Enzyme 644 807 IPR016135 -
Lele40g0045 832 FunFam Ubiquitin-conjugating enzyme 5, E2 649 807 - -
Lele40g0045 832 SMART ubc_7 652 796 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele40g0045 Lele-ChrLele40 311665 319473 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele40g0045 635 798 Miscellaneous Gene Families AT3G17000 24.859 5.57e-06 47.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Lele40g0045 UQ_con 1.1e-37 CL0208