Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele40g0044 ATGCAGTCATTGCAACAGCAATTACTTCGAAAACCTGAAGGGAATGAAACTTTTTTAGCATATCAAGCAGCCCTTCAGGGGGCATTTTGGGGTAGCAATTTTTCATCTCCCAGTGCCATGCAGTTGCCTAGACAATCTTGGAAATTCAACGAATTAACCGAACATGATCCCAAACAAGAGGCCCAACTCAAGGCTCAAAACATTGAGCAGCAAATGCTAAATCCTGTTCATCAAGCATACCTTCAATATGCACTTCAGGCTGCCCAACAAAAGTCTTCTTTGGCAATCCAGTCTCAGCAGCAAAATAAAATGGGAACGTCAGGGTCTTCCTCTGTGAAGGATCAAGAAATGCGTTTGGGAAATATGAAAATGCAGGACCTTATGTCAATGCAGGCGGTAAATCAAGCTCAAGGATTTACCTCCAGGAATGTACCTGAACAATTTTCTCGTGGGGAAAAGAAGATAGAGCAGGGACAGCAGTTAGCCCCTGATCTAAAAAGTGAGGGAAAGCCTTCAACTCAGGGACCAGCCACGGCACCATTAATGCCTGGAAATATGATAAGACCTGTACAAGCACCCAATGCTTGGGAGGGCATCCAAAATGTCATGAGCAACCAGATTGCAGTGTCTGCTCAATTACAGGCTATGCATGCATGGGCACGTGAGCGTAATATTGATCTATCACATCCTGCTAATGCTCACTTAATGGCTCAACCCTTTCCTATGATGCAGTCAAGGATGGTTTCTCAACAAAAAGCAAATGACAGCGGCATTGGTGCTCACTCATCACTTGCACCTGTTTCAAAGCAGCAGGTTTCATCTCCAGCAGGTGCAAGTGATAGCTCAGCACATGCTAATTCATCAAGCGATGCTTCTGGGCTGTCCGGTCCTGCAAAAGCCAGGCAGATTCCTGCCAACAATTTTGGTCCACCAACCAATGCTGTTTCAGCTAGCCACTCCAGTGACATGGTAATGCAGCAATTCAATAATCACAGTAGAGAGTCTCAAGTATCCATGAGGCTACCTGTTTTAGTTGGAAAAGGAATGCCTTCTGGGCAGCCCCAACAGTCCTCTACCAGCATGAATTTGGGTTTAGATCATCATTTGAATGCAAAAAGTACTTTATCTGGTCCAGAACCTCCGCAAATGCAGTATTTAAGGAAGTCAAACCAATCTTCTCCTCAGGAGTCAGGTGCTACAGATGAAGGGGGCTCAGGAAATTATGTGAAATCCCAAGGGGCACCATCTCAGATGCCTCAACAACAACATGGATTTACCAAACAACAGCTGCATGTTCTTAAAGCACAGATACTGGCATTTAGGCGGCTCAAGAAAGGAGATGGTACCCTTCCCCAAGAACTTCTTCGGTCTATTGTCCCACCACCTCTTGAGTTGCAATTGCAGCAGCCAATCCATCCTTCAGGAGGACAAAATCAAGATAAGTCTGCTGGAAACATCATTCCACAACACTCAAGGCACATAGAATCTGATGCAAAGGTTGCAGATGCAAAGGACTTGCAACATGTCCCTTCAGTTAATGGACAGGGTTCTTCAAAGCAGGAAACTTTTGCGAGAGATGAGAAATCCAATGTCTCAGCAGTTCATATGCAAGCTAAACCTGTTGCAACAAAGGATCCTGCACCTATGCTATCTTCTCAGAAGGACGAGCAACAATCATTTGGTTGCTCTGTTAAGTTTGATCAGGAAAGTGAACGTGAAACTAACAGAAATCCTGTTAGGAATGAGTTGCCGTTAGACAGGGGGAAGGCTATTGCACCCCAGCCTTCTGCATCTGAGTCGATGCAAAATAAGAACCCTACACAAACAAGCACAGTTGGGCAGCCAAAAGATGTAGGATCTACAAGAAAATATCATGGACCCCTATTTGATTTCCCCTTCTTTACCAGGAAACATGACTCCTTTGGGTCATCAATGATGGTAAGCAACAACAATAATTTGTTACTGGCATATGATGTCAAGCATCTTCTTGCTGAGGAAGGCATGGAAGTACTTAACAAGAAAAGGACAGAGAATTTAAAGAAGATTGAAGGTCTACTAGCAGATAATTTAGAGAGGAAACTAATTAGGCCAGATCTCGTGTTGAGGTTACAAATTGAAGAGAAAAAGCTTCGTCTTAGAGATCTTCAGGCACGTTTAAGGGATGACATTGATCAACAGCAACAAGAGATAATGGCAATGCCAGAGAGGCAATACCGTAAGTTTGTTAGGTTGTGTGAGCGTCAGCGGATAGAATTGGCTAGGCAAGTGCAAGCATCACAGAGAGCTATAAGGGAGAAGCAACTCAAATCCATATTTCAGTGGCGGAAAAAGCTTCTTGAGGCACACTGGGCTATTCGTGATGCTCGGACTGCTCGGAACAGGGGGGTGGCCAAATATCATGAGAGAATGTTAAGGGAGTTTTCAAAACGTAAAGATGATGACAGAAACAAAAGGATGGAAGCCTTGAAAAATAACGATGTTGACAGATATAGGGAGATGTTGCTGGAGCAGCAGACTAGCATGCCGGGGGATGCTGCTGAGAGATACTCTGTTGTTTCAACTTTCTTAACACAGACAGAAGAGTATCTTCATAAGCTGGGAAGTAAGATAACAGCTGCCAAGAATCAACAGGAAGTAGAGGAGGCAGGAAAAGCTGCTGCAGCTGCTGCACGGTTGGAGGGTCTTTCTGAAGAAGAGGTTAGAGCAGCAGCAGCGTGTGCTGGAGAAGAAGTGATGATTAGAAATCGTTTTATGGAGATGAATGCTCCTAAAGATGGTTCATCTGTCAGCAAATATTACAGCCTTGCTCATGCTGTGAATGAGAAGGTCATAAGGCAACCATCAATGTTGCGGGCAGGAACATTGAGAGATTATCAGCTTGTTGGCTTGCAATGGATGCTTTCTTTGTATAACAACAAGTTAAATGGAATTTTGGCGGATGAGATGGGTCTTGGCAAAACTGTGCAGGTTATGGCATTGATTGCCTATTTGATGGAATTCAAAGGAAATTATGGCCCACATCTCATAATAGTCCCAAATGCTGTTTTGGTTAACTGGAAGAGTGAGTTGTATAACTGGTTACCATCTTTGTCATGCATTTTTTATGTTGGAGGGAAGGATCAACGATCAAAATTATTTTCTCAAGAGGTTTGTGCATTGAAATTTAATGTCCTTGTGACAACTTATGAGTTCATCATGTATGACCGATCAAAGCTTTCAAAAATTGATTGGAAGTATATCGTAATTGATGAAGCACAGAGGATGAAAGATAGGGATTCAGTTCTAGCACGTGATCTTGATCGATATTGTTGTCAAAGACGCCTGCTTTTGACTGGAACCCCCTTACAGAATGATTTGAAGGAGCTTTGGTCACTTTTAAACCTACTTCTTCCTGAAGTTTTTGACAATCGTAAAGCATTTCATGATTGGTTCTCGAAACCTTTCCAAAAGGAAGGCCTTAGTCAAAATGCAGAGGATGATTGGCTTGAGACAGAAAAGAAAGTTATAATTATCCATCGACTTCATCAGATTCTTGAGCCATTCATGCTTAGGCGTCGTGTTGAAGATGTAGAAGGCATGCTGCCACCAAAGGTCTCTATAGTTTTGCGATGTAGAATGTCAGCTATCCAGAGTGCTATTTATGACTGGGTCAAATCCACTGGTACCCTTCGTCTTGATCCTGAGGATGAGAAACTTAAGGTTCAAAAGAATCCAGTCTACCAGGTGAAGCAATATAAAACGTTAAATAATAGATGCATGGAGCTGCGTAAAACTTGCAATCATCCATTGCTTAACTACCCATTCTTCAATGACTTATCCAAAGATTTCCTTGTAAAATCTTGTGGGAAACTGTGGATCTTGGATCGAATCCTTATAAAACTTGAAAAGACCGGGCACCGAGTTCTGCTCTTTAGTACTATGACAAAACTATTGGACATCTTGGAAGAATACCTACAATGGCGAGGGCTTGTGTACAGAAGAATTGATGGGACAACGAGTTTAGAAGATCGTGAATCAGCTATAGTGGATTTCAATAGTGCTGATTCAGACTGTTTCATCTTCTTGCTTAGTATTCGAGCTGCTGGGCGAGGCCTTAACCTTCAGTCTGCTGACACAGTAGTCATATATGATCCTGACCCAAATCCTAAAAATGAGGAGCAAGCAGTCGCTAGAGCTCATCGCATTGGGCAGAACAGAGAAGTCAAAGTTATCTACATGGAAGCTGTTGTAGACAAAATCTCCAGCTGTCAAAAAGAGGATGAACTGAGAAGTGGAGGGACTGTTGATATGGAGGAAGAACTTGTAGGTAAGGATCGTTATATTGGATCCATTGAAAGCCTAATAAGGAACAATATTCAACAGTACAAGATTGATATGGCTGACGAGGTCATTAATGCTGGACGTTTTGACCAAAGAACGACACATGAAGAGAGACGCTTGACTTTGGAGACGTTATTACATGATGAAGAGAGGTATCAGGAGACTGTCCATGATGTTCCCTCACTACAGGAGGTAAATCGCATGATTGCTAGGAGTAAGGAGGAACTTGAATTGTTTGATCAAATGGATGAGGAATTGGATTGGATTGAAGAGATGACAGGATATGATCAGGTGCCTAAGTGGCTACGAGTAAGTACAAGAGAAGTAAATGCCACTATTGCTGCTTTATCAAGAAGACCATCAAAGAACACTCTATTGGGTGATGTTGGCGTGGAATCCAGTGAAATGGGGTCTGAAAGGAGAAGGGGACGACCCAAGGGAAAGAAAAATCTTAATTATAAAGAGTTAGATGATGAAAATGAAGAATTCTCTGAAGCAAGTTCTGATGAAAGAAATGAATATTCAGCCCATGAAGACGAAGGGGAAATTGGAGAATTTGAAGATGATGGGCTGAGCGTGGCAGATGGAGCTCAACCCAATGATAAGGATCAATTGGAAGATGGTCCAATTTGTGATGCTGGATATGTATTTCCTCAGTCTACAGAGAATGCTAGAAACAATCTTACGGCTGAAGGATCTGAATCCCCAGGAATTTCTTCAGACAGTCAAAGGTTGACACAGACAATATCTCCTTCACTTTCCTCCCAGAAATTTGGTTCCCTATCTGCATTGGATGCCAGGCCAAGTTCCCTTTCGAAACGGATGACTGATGAGTTAGAGGAGGGAGAAATTGCTGTATCTGGTGATTCTCACATGGATAATCAACAATCTGGGAGTTGGATTCATGATCGTGATGAAGGTGAAGATGAACAAGTTTTGCAACCTAAGGTTAAGCGTAAACGTAGCCTTCGTGTTCGACCTCGTCTTGCCATGGAGAGGCCAGACGAAAAGTATGGTGGTGACATGGGATCTCTTCACCAAGGAGAATCATCTCTTTTGTCTGTTCGTACAGACCATAGATTTCAAGCGCAAGCAAGGACTGATCCTGAAGAAAAGTCATTTGGAGGATCCAATGCCAGCAGGCATGATCAGAATGAGTCATCCTTGAAAGTAAAGAGCAATTTACCTTCAAGGAGAGTAGCTACTACCTCCAAATTTCATGGCTCACCTAAGTCTAGTCGATTGAATTGCATTTCTCTTCCTGAGGATGATGGACACTCAAGAGAAAGTTGGGAGGGGAAGCATATCAACTCTAGTGGGTCTTTGGCCTTATCCTCTAAAATGCCCGAAATCATCCAAAGAAGGTGCAAGAGTGTAATTAGCAAGCTCCAAAGGAGAATAGACAAGGAAGGTCAGCAAATTGTGCCTTTGCTAAAAGATTTATGGAAGAGGATTGAAAGTTCAGGTTACACAGGTGGATCTGGGAATAGTTTGTTGGATTTGCGGAAGATTGACCAGCGAATTGATAGATTGGAGTATAGTGGAGTAATGGAGCTTGTGTTTGATGTGCAGTTCATGCTGAAGAGTGCAATGCATTTTTATGGGTTTTCACATGAGGTAAGATCTGAAGCAAGAAAGGTTCATGATCTCTTTTTTGATATCTTGAAAATTGCTTTTCCTGATACGGATTTCCGAGAAGCAAGAAATGCACTTCCTTTCTCGGGTCAAATTTCAGCCAGTGCTGTAACATCTCCCAGACAAATGGCTGGCAACCATACCAAGAGGCACAGGACGATAAATGAGGTGGAAACTGATGCAGGCCCTTCACAGAAGCACCTGCAACGTGGATTTGCTTCAAGTGGGGAAAACACCAGGATCAAAGTTCATATTCTACAGAAGGAATCAAAATCTGGAAATGGAGGTGGCAACAGCCGAGAACATCAGCAGGATGATTCTCCACTGCTTACTCATCCAGGTGAACTGGTAGTATGCAAGAAGAGAAGAAATGACAGGGACAAATCATTGGCGAAGTCCAGGACTGGGTCAGTTGGCCCGGTTTCACCACCCAGCGTGGTCCCTGCTTCAAGAAGTCCGGGGCTTGGTTCAGTCCCAAAGGATGCTAGACTGGCGATTGGCCAGCCATCTCAGCAACCGAATGGATCAGGTGGGTCAGTTGGCTGGGCGAATCCAGTAAAGCGATTAAGGTCAGATTCTGGGAAGAGAAGACCAAGTCATCTGTAG 6561 0.4318 MQSLQQQLLRKPEGNETFLAYQAALQGAFWGSNFSSPSAMQLPRQSWKFNELTEHDPKQEAQLKAQNIEQQMLNPVHQAYLQYALQAAQQKSSLAIQSQQQNKMGTSGSSSVKDQEMRLGNMKMQDLMSMQAVNQAQGFTSRNVPEQFSRGEKKIEQGQQLAPDLKSEGKPSTQGPATAPLMPGNMIRPVQAPNAWEGIQNVMSNQIAVSAQLQAMHAWARERNIDLSHPANAHLMAQPFPMMQSRMVSQQKANDSGIGAHSSLAPVSKQQVSSPAGASDSSAHANSSSDASGLSGPAKARQIPANNFGPPTNAVSASHSSDMVMQQFNNHSRESQVSMRLPVLVGKGMPSGQPQQSSTSMNLGLDHHLNAKSTLSGPEPPQMQYLRKSNQSSPQESGATDEGGSGNYVKSQGAPSQMPQQQHGFTKQQLHVLKAQILAFRRLKKGDGTLPQELLRSIVPPPLELQLQQPIHPSGGQNQDKSAGNIIPQHSRHIESDAKVADAKDLQHVPSVNGQGSSKQETFARDEKSNVSAVHMQAKPVATKDPAPMLSSQKDEQQSFGCSVKFDQESERETNRNPVRNELPLDRGKAIAPQPSASESMQNKNPTQTSTVGQPKDVGSTRKYHGPLFDFPFFTRKHDSFGSSMMVSNNNNLLLAYDVKHLLAEEGMEVLNKKRTENLKKIEGLLADNLERKLIRPDLVLRLQIEEKKLRLRDLQARLRDDIDQQQQEIMAMPERQYRKFVRLCERQRIELARQVQASQRAIREKQLKSIFQWRKKLLEAHWAIRDARTARNRGVAKYHERMLREFSKRKDDDRNKRMEALKNNDVDRYREMLLEQQTSMPGDAAERYSVVSTFLTQTEEYLHKLGSKITAAKNQQEVEEAGKAAAAAARLEGLSEEEVRAAAACAGEEVMIRNRFMEMNAPKDGSSVSKYYSLAHAVNEKVIRQPSMLRAGTLRDYQLVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELYNWLPSLSCIFYVGGKDQRSKLFSQEVCALKFNVLVTTYEFIMYDRSKLSKIDWKYIVIDEAQRMKDRDSVLARDLDRYCCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSKPFQKEGLSQNAEDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGMLPPKVSIVLRCRMSAIQSAIYDWVKSTGTLRLDPEDEKLKVQKNPVYQVKQYKTLNNRCMELRKTCNHPLLNYPFFNDLSKDFLVKSCGKLWILDRILIKLEKTGHRVLLFSTMTKLLDILEEYLQWRGLVYRRIDGTTSLEDRESAIVDFNSADSDCFIFLLSIRAAGRGLNLQSADTVVIYDPDPNPKNEEQAVARAHRIGQNREVKVIYMEAVVDKISSCQKEDELRSGGTVDMEEELVGKDRYIGSIESLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRLTLETLLHDEERYQETVHDVPSLQEVNRMIARSKEELELFDQMDEELDWIEEMTGYDQVPKWLRVSTREVNATIAALSRRPSKNTLLGDVGVESSEMGSERRRGRPKGKKNLNYKELDDENEEFSEASSDERNEYSAHEDEGEIGEFEDDGLSVADGAQPNDKDQLEDGPICDAGYVFPQSTENARNNLTAEGSESPGISSDSQRLTQTISPSLSSQKFGSLSALDARPSSLSKRMTDELEEGEIAVSGDSHMDNQQSGSWIHDRDEGEDEQVLQPKVKRKRSLRVRPRLAMERPDEKYGGDMGSLHQGESSLLSVRTDHRFQAQARTDPEEKSFGGSNASRHDQNESSLKVKSNLPSRRVATTSKFHGSPKSSRLNCISLPEDDGHSRESWEGKHINSSGSLALSSKMPEIIQRRCKSVISKLQRRIDKEGQQIVPLLKDLWKRIESSGYTGGSGNSLLDLRKIDQRIDRLEYSGVMELVFDVQFMLKSAMHFYGFSHEVRSEARKVHDLFFDILKIAFPDTDFREARNALPFSGQISASAVTSPRQMAGNHTKRHRTINEVETDAGPSQKHLQRGFASSGENTRIKVHILQKESKSGNGGGNSREHQQDDSPLLTHPGELVVCKKRRNDRDKSLAKSRTGSVGPVSPPSVVPASRSPGLGSVPKDARLAIGQPSQQPNGSGGSVGWANPVKRLRSDSGKRRPSHL 2186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele40g0044 2186 Gene3D - 946 1194 IPR038718 -
Lele40g0044 2186 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1189 1526 IPR027417 -
Lele40g0044 2186 MobiDBLite consensus disorder prediction 370 426 - -
Lele40g0044 2186 MobiDBLite consensus disorder prediction 246 295 - -
Lele40g0044 2186 CDD Bromodomain 1940 1995 - -
Lele40g0044 2186 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 938 1185 IPR027417 -
Lele40g0044 2186 Coils Coil 705 729 - -
Lele40g0044 2186 MobiDBLite consensus disorder prediction 1804 1856 - -
Lele40g0044 2186 CDD SF2_C_SNF 1281 1406 - -
Lele40g0044 2186 MobiDBLite consensus disorder prediction 1659 1709 - -
Lele40g0044 2186 FunFam ATP-dependent helicase BRM 756 830 - -
Lele40g0044 2186 Gene3D - 1887 2028 IPR036427 GO:0005515
Lele40g0044 2186 FunFam ATP-dependent helicase BRM 1195 1405 - -
Lele40g0044 2186 MobiDBLite consensus disorder prediction 2101 2117 - -
Lele40g0044 2186 Pfam Helicase conserved C-terminal domain 1284 1396 IPR001650 -
Lele40g0044 2186 MobiDBLite consensus disorder prediction 149 184 - -
Lele40g0044 2186 ProSiteProfiles QLQ domain profile. 424 460 IPR014978 GO:0005524|GO:0005634|GO:0006355
Lele40g0044 2186 MobiDBLite consensus disorder prediction 1811 1856 - -
Lele40g0044 2186 FunFam ATP-dependent helicase BRM 946 1194 - -
Lele40g0044 2186 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1286 1463 IPR001650 -
Lele40g0044 2186 Gene3D - 1195 1405 IPR027417 -
Lele40g0044 2186 MobiDBLite consensus disorder prediction 550 565 - -
Lele40g0044 2186 PANTHER SNF2/RAD54 HELICASE FAMILY 663 1745 - -
Lele40g0044 2186 SMART helicmild6 1312 1396 IPR001650 -
Lele40g0044 2186 FunFam Brahma1 1887 2010 - -
Lele40g0044 2186 Coils Coil 1502 1522 - -
Lele40g0044 2186 MobiDBLite consensus disorder prediction 2022 2186 - -
Lele40g0044 2186 Pfam SNF2-related domain 958 1262 IPR000330 GO:0005524|GO:0140658
Lele40g0044 2186 SMART ultradead3 951 1140 IPR014001 -
Lele40g0044 2186 SUPERFAMILY Bromodomain 1939 1998 IPR036427 GO:0005515
Lele40g0044 2186 SMART QLQ_2 423 460 IPR014978 GO:0005524|GO:0005634|GO:0006355
Lele40g0044 2186 MobiDBLite consensus disorder prediction 595 617 - -
Lele40g0044 2186 MobiDBLite consensus disorder prediction 1564 1787 - -
Lele40g0044 2186 MobiDBLite consensus disorder prediction 1711 1727 - -
Lele40g0044 2186 MobiDBLite consensus disorder prediction 246 318 - -
Lele40g0044 2186 Gene3D - 757 830 - -
Lele40g0044 2186 Coils Coil 1593 1613 - -
Lele40g0044 2186 MobiDBLite consensus disorder prediction 566 583 - -
Lele40g0044 2186 MobiDBLite consensus disorder prediction 508 618 - -
Lele40g0044 2186 SMART bromo_6 1885 2000 IPR001487 GO:0005515
Lele40g0044 2186 MobiDBLite consensus disorder prediction 2043 2061 - -
Lele40g0044 2186 MobiDBLite consensus disorder prediction 1767 1782 - -
Lele40g0044 2186 MobiDBLite consensus disorder prediction 1738 1757 - -
Lele40g0044 2186 Pfam QLQ 425 458 IPR014978 GO:0005524|GO:0005634|GO:0006355
Lele40g0044 2186 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 967 1132 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele40g0044 Lele-ChrLele40 299520 309865 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele40g0044 976 1437 RAD5 or RAD16-like Gene Family AT1G02670 26.404 1.46e-31 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lele40g0044 SNF2_N 9.5e-64 CL0023