Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele40g0021 ATGGATCGAGGGGACCATATGGCGTTGTCTGGGTCCGCATCTTATTATATGCAGAGAGGGCTAGGTGGGGGTGGAGCACAAGCTGAGTTACACGGTTCCCCGGGTATTCGGCACCTCTCGAATCCCAATCTGCCATTTCAGCCAGGCATTGGAGGCGGCGGCGGCGGCGGCATTGGATCCACATTAGCAATAGAATCTTCAGCAATTTCACCTCATGGTGTGAATGTGGGTGCTCCTGGTGCACCGTCGGGAGAGCCTGTCAAAAGGAAGAGAGGAAGGCCTAGGAAATATGGTCCAGATGGAAGTGTATCATTGGCCTTGACTCCATCATCATCCGGTCATCCCAGCGGAGCATTGACACAAAGCCAGAAGCGAGGCAGAGGCCGTCCTCCGGGATCTGGAAAGAAACAGCAGTTAACCCCTCTTGGTGAATTGATGTCTGGTTCGGCAGGGATGGGATTTACTCCTCATATCATCACCATTGCAGTTGGAGAGGACATTGCAACAAAAATAATGGCATTTTCTCAGCAAGGACCTAGAGCCATATGCATTTTGTCAGCAAACGGTGCTGTCTCCAATGTGACGCTTCGACAGCCTTCAAGTTCGGGTGGCACTGTCACATACGAGGGCCGTTTTGAGATATTGTGCCTATCGGGCTCTTATTTGCTCACTGAAAGTGGTGGCTCTCGCAATCGAACTGGTGGTCTTAGTGTTTCGCTAGCTAGTCCTGATGGCCGTGTCATTGGTGGTGGGGTCGGTGGATTGCTGATTGCAGCAAGTCCTGTTCAGGTGATAGTTGGGAGCTTCATGTGGGGTGGATCAAAGACAAAGAGCAAGAAAAAGGAAGCTGCAGAAGCAGAAGTAGCCATGGAATCAGATCATCATCATCATCATCAACAACAACAGCAACACGCTGTTCATAATCCATCTGCGTTGAACAGCATTTCACCTAATCAAAATCTCACGCAAGCTTCATCCATGAGTTCCTGGCCGGCTGCTTCTCGTCAATTGGACATGCGTAATTCCCATGTTGACATCGATTTAATGCGTGGGTGA 1056 0.5028 MDRGDHMALSGSASYYMQRGLGGGGAQAELHGSPGIRHLSNPNLPFQPGIGGGGGGGIGSTLAIESSAISPHGVNVGAPGAPSGEPVKRKRGRPRKYGPDGSVSLALTPSSSGHPSGALTQSQKRGRGRPPGSGKKQQLTPLGELMSGSAGMGFTPHIITIAVGEDIATKIMAFSQQGPRAICILSANGAVSNVTLRQPSSSGGTVTYEGRFEILCLSGSYLLTESGGSRNRTGGLSVSLASPDGRVIGGGVGGLLIAASPVQVIVGSFMWGGSKTKSKKKEAAEAEVAMESDHHHHHQQQQQHAVHNPSALNSISPNQNLTQASSMSSWPAASRQLDMRNSHVDIDLMRG 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele40g0021 351 ProSiteProfiles PPC domain profile profile. 150 291 IPR005175 -
Lele40g0021 351 MobiDBLite consensus disorder prediction 104 127 - -
Lele40g0021 351 Pfam Plants and Prokaryotes Conserved (PCC) domain 156 269 IPR005175 -
Lele40g0021 351 SUPERFAMILY AF0104/ALDC/Ptd012-like 154 271 - -
Lele40g0021 351 FunFam AT-hook motif nuclear-localized protein 1-like 156 287 - -
Lele40g0021 351 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 75 328 IPR039605 GO:0003680
Lele40g0021 351 MobiDBLite consensus disorder prediction 303 336 - -
Lele40g0021 351 CDD DUF296 155 269 IPR005175 -
Lele40g0021 351 MobiDBLite consensus disorder prediction 70 147 - -
Lele40g0021 351 MobiDBLite consensus disorder prediction 24 53 - -
Lele40g0021 351 MobiDBLite consensus disorder prediction 276 336 - -
Lele40g0021 351 MobiDBLite consensus disorder prediction 276 299 - -
Lele40g0021 351 SMART AT_hook_2 88 100 IPR017956 GO:0003677
Lele40g0021 351 SMART AT_hook_2 124 136 IPR017956 GO:0003677
Lele40g0021 351 Gene3D - 156 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele40g0021 Lele-ChrLele40 172532 176252 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele40g0021 1 351 AT-hook Motif Nuclear Localized (AHL) Family AT3G61310 50.667 1.52e-93 281