Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele40g0012 ATGATTTCTGGTGATTGCCGACAGGAAGGAAAACAGAGAAAAAATATAAAAATGTCTTTCACTGGAACTTTGGACAAATGCAAGGCTTGCGACAAGACTGTCCATGTGGTGGACATGATGACCCTCGAAGGCACCCCTTACCATAAATCCTGCTTCAAGTGCAGCCACTGCAAGGGATTTCTCTCCATGAGCAGCTACTCCTGGATGGATGGCGTCCTCTTCTGCAAGCCCCACTTTGAGCAGCTTTTCAAGGAATCTGGCAATTTCAGCAAGAACTTTCAGTCAGCGAGGTCCGCTGAGAAGAATGATCTGTCTAGGACTTCAAGCAAGCTGTCCTCCATGTTCAGTGGAACCCAGGACAAGTGCTCTGTGTGTGCCAAGACAGTGTATCCTCTGGAGAAGATGACGCTGGAAGGAGAATGCTTCCACAAGTCGTGCTTCAGGTGTGCTCATGCAGGCTGCCCTCTCACCCACTCCTCCTACGCCGCCCTCGACGGCGTGCTCTACTGCAGGCACCACTTTGCTCAGCTCTTCATGGAGAAGGGAAATTACAACCATGTCCTCCAGGCTGCTGCCCACAAGCGCAGCGCCAGCGCTGGTACTCCTCCTCCTGAGCCTGCTACTGACGATGAGGGCAGCCCTCATCATGATGACGAGAAGGATGATGACAAGGATGACAAGGACGACCCCAAAGATTACCATGATGATGATAAAGAAGACCACTCTTAG 729 0.513 MISGDCRQEGKQRKNIKMSFTGTLDKCKACDKTVHVVDMMTLEGTPYHKSCFKCSHCKGFLSMSSYSWMDGVLFCKPHFEQLFKESGNFSKNFQSARSAEKNDLSRTSSKLSSMFSGTQDKCSVCAKTVYPLEKMTLEGECFHKSCFRCAHAGCPLTHSSYAALDGVLYCRHHFAQLFMEKGNYNHVLQAAAHKRSASAGTPPPEPATDDEGSPHHDDEKDDDKDDKDDPKDYHDDDKEDHS 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele40g0012 242 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 53 93 - -
Lele40g0012 242 SMART lim_4 121 173 IPR001781 -
Lele40g0012 242 SMART lim_4 26 78 IPR001781 -
Lele40g0012 242 ProSiteProfiles LIM domain profile. 25 85 IPR001781 -
Lele40g0012 242 Pfam LIM domain 122 177 IPR001781 -
Lele40g0012 242 Pfam LIM domain 27 82 IPR001781 -
Lele40g0012 242 ProSiteProfiles LIM domain profile. 120 180 IPR001781 -
Lele40g0012 242 FunFam LIM domain and actin-binding 1 21 91 - -
Lele40g0012 242 ProSitePatterns LIM zinc-binding domain signature. 27 61 IPR001781 -
Lele40g0012 242 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 20 52 - -
Lele40g0012 242 MobiDBLite consensus disorder prediction 193 242 - -
Lele40g0012 242 PANTHER OS06G0237300 PROTEIN 17 99 IPR045268 -
Lele40g0012 242 Gene3D Cysteine Rich Protein 116 186 - -
Lele40g0012 242 Gene3D Cysteine Rich Protein 23 91 - -
Lele40g0012 242 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 148 187 - -
Lele40g0012 242 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 114 147 - -
Lele40g0012 242 FunFam LIM domain and actin-binding 1 116 186 - -
Lele40g0012 242 MobiDBLite consensus disorder prediction 209 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele40g0012 Lele-ChrLele40 130562 132809 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Lele40g0012 LIM 3.4e-10 CL0167