Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g1425 ATGAACATGATGAGACGACTCAAAAGCATTGCTTCAGGGCGCACTACCATTTCATCGGATTCTGGAGGGCAGTTTACCCCAAAAAGAGTTAAGGTTGATCAAGAAACTGAGGAAACACATTCTATTGGGAGAGGCAGGGCAGATCGGAAACATAATGAGGATGCATCAAAAGAAGCTACTGTAGATGCACCCAATGCATCTGTCGATATAGAGGCAACTATAGTCAGCGGTAATGGAACAGAAGTAGGTCAGATGATTACTACTACCATTGGTGGTAAAGACGGACAACCAAAGCAGGCACTCTCATACATGGCAGAACGTGTGGTTGGCACTGGTTCCTTTGGTGTTGTTTTTAAGGCCCAGTGTGTTGAGACTGGTGAAGCGGTTGCCATTAAGAAGGTGTTGCAAGACAAAAGATATAAGAATAGGGAACTCCAGATAATTCGCAAGCTTGACCACCTTAACGTTTGTCAATTGAAGAGCTGTTTCTTTTCAACTACTGATAAAGATGAGTTGTTCCTGAACCTAGTTTTGGAGTATGTACCTGAAACTGTCTATAGAGTCTCAAAGCAATATACTAGGATACACCAGCACATGCCTATCATTTATGTACAACTGTATACATATCAAATGTGTCGTGCACTAAATTATTTGCATAATGTGGTTGGTGTGTGTCATCGTGACATCAAACCCCAGAACTTACTGGTTAATTCCGAGACTCATCAGCTAAAAATGTGTGATTTTGGGAGTGCAAAGATGTTGGTGCCTGGTAAAGCTAACATATCATACATATGCTCAAGGTACTATAGGGCTCCAGAACTTATATTTGGGGCAACAGAATACACAACTGCTATTGACATATGGTCTGTTGGTTGTGTTATGGCTGAGCTCCTTCTAGGAAAGCCACTGTTTCCGGGAGAAAGTGGGGTTGATCAATTGGTTGAAATCATTAAGGTTTTTCAGAAGAGAATGCCCGAAGAAGCGGTGGATCTCGTCTCAAGACTGCTTCGTTATTCACCAAATCTACGTTGCACTGCTTTGGAAGCATGTGCGCACTCCTTCTTTGATGATCTCAGAGACCCAAATACGCGTTTACCAAATGGGCAACCCGTGCCTCCATTGCTCAATTTCACTACAAAAGAACTGGCTGGTGCCCCTGCTGAGTTATGTAATCGTCTTATTCCCAAGCACGCCAGGGACTGA 1203 0.4314 MNMMRRLKSIASGRTTISSDSGGQFTPKRVKVDQETEETHSIGRGRADRKHNEDASKEATVDAPNASVDIEATIVSGNGTEVGQMITTTIGGKDGQPKQALSYMAERVVGTGSFGVVFKAQCVETGEAVAIKKVLQDKRYKNRELQIIRKLDHLNVCQLKSCFFSTTDKDELFLNLVLEYVPETVYRVSKQYTRIHQHMPIIYVQLYTYQMCRALNYLHNVVGVCHRDIKPQNLLVNSETHQLKMCDFGSAKMLVPGKANISYICSRYYRAPELIFGATEYTTAIDIWSVGCVMAELLLGKPLFPGESGVDQLVEIIKVFQKRMPEEAVDLVSRLLRYSPNLRCTALEACAHSFFDDLRDPNTRLPNGQPVPPLLNFTTKELAGAPAELCNRLIPKHARD 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g1425 400 SMART serkin_6 103 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele39g1425 400 MobiDBLite consensus disorder prediction 1 61 - -
Lele39g1425 400 MobiDBLite consensus disorder prediction 9 25 - -
Lele39g1425 400 FunFam Glycogen synthase kinase-3 beta 87 182 - -
Lele39g1425 400 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 69 319 - -
Lele39g1425 400 ProSitePatterns Protein kinases ATP-binding region signature. 109 133 IPR017441 GO:0005524
Lele39g1425 400 SUPERFAMILY Protein kinase-like (PK-like) 102 380 IPR011009 -
Lele39g1425 400 ProSitePatterns Serine/Threonine protein kinases active-site signature. 224 236 IPR008271 GO:0004672|GO:0006468
Lele39g1425 400 MobiDBLite consensus disorder prediction 30 58 - -
Lele39g1425 400 Gene3D Transferase(Phosphotransferase) domain 1 183 399 - -
Lele39g1425 400 Gene3D Phosphorylase Kinase; domain 1 88 182 - -
Lele39g1425 400 FunFam Mitogen-activated protein kinase 183 327 - -
Lele39g1425 400 ProSiteProfiles Protein kinase domain profile. 103 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele39g1425 400 CDD STKc_GSK3 101 358 IPR039192 -
Lele39g1425 400 Pfam Protein kinase domain 103 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g1425 Lele-ChrLele39 22400408 22404540 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele39g1425 109 358 Core Cell Cycle Gene Families AT3G48750 32.180 4.64e-46 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Lele39g1425 Pkinase 4.5e-61 CL0016