Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g1414 ATGATTTCTGGTGATTGCCGACAGGCTGAAGTGATGATGAGGACGAGAGGAATCTCCGCTAATTTCGCCGTGTGCAGTCCGTACGTATTCTTAGACTTTGTCTGGGGGGTCTCTCTTCATCTCATTCATTCATCAATAATCCTATTTCTGAAAACTCAGACTTATTGGGTTGCAGGGAAAACCCGCACCAGCAGAAATATAAACAACACAAGACATAGAAAAGGTTTGCCTTCACCCAGGAAGCGAAAACAAAGAAAAGAAAAATATAAAAGAAAAGTAAAAATGTCTTTCACCGGAACTTTGGACAAATGCAAGGCTTGCGACAAGACTGTCCATGTGGTGGACATGATGACCCTCGAAGGCACCCCTTACCATAAATCCTGCTTCAAGTGCAGCCACTGCAAGGGATTTCTCTCCATGAGCAGCTACTCCTGGATGGATGGCGTCCTCTACTGCAAGCCCCATTTTGAGCAGCTTTTCAAGGAATCTGGAAATTTCAGCAAGAACTTTCAGTCAGCGAGATCCGCTGAGAAGAATGATCTGTCCAGGACTTCAAGCAAGCTGTCCTCCATGTTCAGTGGAACCCAGGACAAGTGCTCTGTGTGTGCCAAGACAGTCTATCCTCTGGAGAAGGTGACGCTGGAAGGAGAGTGCTTCCACAAGTCGTGCTTCAGGTGCGCTCATGCAGGCTGCCCTCTCACCCACTCCTCCTACGCCGCCCTCGACGGCGTGCTCTACTGCAGGCACCACTTTGCCCAGCTCTTCATGGAGAAGGGAAATTACAACCATGTCCTCCAAGCTGCTGCCCACAAGCGCAGCGCCAGCGCTGGTACTCCTCCTCCTGAGCCTGCTACTGACGATGAAGCCAGCCCCCATCACGATGACAGGAAGGACGACGACAACGATCACAAGGACGAGCCCAAAGATGACCATGATGATGATAAAGAAGACCACTCTTAG 960 0.4979 MISGDCRQAEVMMRTRGISANFAVCSPYVFLDFVWGVSLHLIHSSIILFLKTQTYWVAGKTRTSRNINNTRHRKGLPSPRKRKQRKEKYKRKVKMSFTGTLDKCKACDKTVHVVDMMTLEGTPYHKSCFKCSHCKGFLSMSSYSWMDGVLYCKPHFEQLFKESGNFSKNFQSARSAEKNDLSRTSSKLSSMFSGTQDKCSVCAKTVYPLEKVTLEGECFHKSCFRCAHAGCPLTHSSYAALDGVLYCRHHFAQLFMEKGNYNHVLQAAAHKRSASAGTPPPEPATDDEASPHHDDRKDDDNDHKDEPKDDHDDDKEDHS 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g1414 319 CDD LIM2_SF3 199 259 - -
Lele39g1414 319 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 97 129 - -
Lele39g1414 319 ProSiteProfiles LIM domain profile. 197 257 IPR001781 -
Lele39g1414 319 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 130 170 - -
Lele39g1414 319 PANTHER OS06G0237300 PROTEIN 85 176 IPR045268 -
Lele39g1414 319 MobiDBLite consensus disorder prediction 270 319 - -
Lele39g1414 319 FunFam LIM domain and actin-binding 1 193 263 - -
Lele39g1414 319 ProSiteProfiles LIM domain profile. 102 162 IPR001781 -
Lele39g1414 319 MobiDBLite consensus disorder prediction 286 319 - -
Lele39g1414 319 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 225 264 - -
Lele39g1414 319 Pfam LIM domain 104 159 IPR001781 -
Lele39g1414 319 Pfam LIM domain 199 254 IPR001781 -
Lele39g1414 319 ProSitePatterns LIM zinc-binding domain signature. 104 138 IPR001781 -
Lele39g1414 319 Gene3D Cysteine Rich Protein 193 263 - -
Lele39g1414 319 CDD LIM1_SF3 100 162 - -
Lele39g1414 319 MobiDBLite consensus disorder prediction 67 89 - -
Lele39g1414 319 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 191 224 - -
Lele39g1414 319 SMART lim_4 198 250 IPR001781 -
Lele39g1414 319 SMART lim_4 103 155 IPR001781 -
Lele39g1414 319 FunFam LIM domain and actin-binding 1 98 168 - -
Lele39g1414 319 Gene3D Cysteine Rich Protein 99 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g1414 Lele-ChrLele39 22323341 22326367 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Lele39g1414 LIM 3.1e-10 CL0167