Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g1412 ATGGGAAGAACACCCTGCTGCGACAAGAGGGGTTTGAAGAAAGGGCCCTGGACGGCTGAAGAGGATGAGCTTCTTGTTGATTACATCAAGAAGAATGGTGGCCATGGAAGCTGGCGTTCTCTCCCTAAGTTGGCAGGTCTGCTTCGGTGTGGGAAGAGTTGCAGGCTAAGGTGGACAAACTATCTAAGGCCTGATATAAAACGAGGTCCATTCAATGTTGAGGAGGAGAAGCTTGTAATACAGCTTCATGCCATCCTTGGTAATAGGTGGGCGGCCATAGCGTCTCAGCTACCGGGAAGAACAGACAATGAGATCAAGAATCTGTGGAACACCCACTTGAAGAAGCGACTCTTGTGCATGGGACTTGACCCTCTCACCCACAAGCCTCTTTCTTCCTCTTCCTCTTCTTCTAATCCCAACAAGGCCCGCGCCGCCTCCGCCTCCATCTCCACTCGCCACATGGCTCAGTGGGAGAGCGCCAGGCTGGAGGCCGAGGCTCGCCTCTCCAGAGAGACCTCTCTCTTCACTTCCCATTCCTCCCCCGACTCCGACTTCTTCCTCCGTCTCTGGAACTCCGACGTCGGCGACGCCTTCCGCAACATCAACGCCGTCTCCTCTCCTGGCTCCTCCTCTTCCACCAAGTGCACTGTTACTACACCCTCCTTTTTCTCCACGCAAGCTCCGGCAACGCGTGTTTTCATGCCTGCGTCTGAGGACTCTTCCATCTCCAATGACCAGCTGGAAGACTCCTCAGACACCGCGCTGCAGCTCTTGTTGGACTTCCCTATTTACAATGACATGAACTTCTTAGAGGCTAACTCTTTCATTTCTCCTCTTTAG 840 0.5357 MGRTPCCDKRGLKKGPWTAEEDELLVDYIKKNGGHGSWRSLPKLAGLLRCGKSCRLRWTNYLRPDIKRGPFNVEEEKLVIQLHAILGNRWAAIASQLPGRTDNEIKNLWNTHLKKRLLCMGLDPLTHKPLSSSSSSSNPNKARAASASISTRHMAQWESARLEAEARLSRETSLFTSHSSPDSDFFLRLWNSDVGDAFRNINAVSSPGSSSSTKCTVTTPSFFSTQAPATRVFMPASEDSSISNDQLEDSSDTALQLLLDFPIYNDMNFLEANSFISPL 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g1412 279 FunFam MYB transcription factor 70 117 - -
Lele39g1412 279 CDD SANT 16 62 IPR001005 -
Lele39g1412 279 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Lele39g1412 279 SMART sant 67 115 IPR001005 -
Lele39g1412 279 SMART sant 13 64 IPR001005 -
Lele39g1412 279 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 219 - -
Lele39g1412 279 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Lele39g1412 279 FunFam Myb transcription factor 11 68 - -
Lele39g1412 279 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Lele39g1412 279 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Lele39g1412 279 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Lele39g1412 279 MobiDBLite consensus disorder prediction 129 149 - -
Lele39g1412 279 Gene3D - 11 68 - -
Lele39g1412 279 Gene3D - 70 117 - -
Lele39g1412 279 CDD SANT 70 113 IPR001005 -
Lele39g1412 279 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Lele39g1412 279 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g1412 Lele-ChrLele39 22317254 22318529 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele39g1412 1 273 MYB Transcription Factor Family AT3G61250 63.763 1.12e-122 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele39g1412 Myb_DNA-binding 4.6e-14 CL0123