Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g1411 ATGGCAAGGTTAAAGATACCACCACCTGATACGCGCTATAGAACAGAGGATGTAACAGCAACTAAAGGAAATGAATTTGAGGATTATTTTTTGAAGCGTGAGCTGCTTATGGGAATATATGAGAAGGGTTTTGAAAGGCCTTCTCCTATTCAGGAAGAAAGTATACCAATTGCACTTACTGGTAGTGACATTCTTGCTAGGGCTAAGAATGGAACAGGAAAAACAGCTGCCTTTTGCATTCCTGCATTGGAAAAAATTGACCAGGATAACAATGTTATTCAAGCTGTTATACTGGTCCCAACACGAGAGTTGGCCTTGCAAACATCTCAAGTGTGCAAAGAGTTGGGAAAACATTTGAAAATTCAAGTTATGGTTACGACAGGTGGTACCAGCCTGAAGGATGATATTATGCGGTTATATCAGCCAGTTCATTTACTAGTTGGAACGCCAGGACGAATATTAGATCTTGCGAAAAAGGGTGTTTGTGTTTTGAAAGATTGCAGTATGCTTGTTATGGATGAGGCTGATAAGCTCCTCTCCCCAGAGTTCCAGCCTTCAATAGAGCAGTTGATTCATTTGCTGCCTACAATTCGTCAAATATTGATGTTTTCAGCCACTTTTCCTGTCACCGTTAAGGACTTTAAAGATAGATATCTCAAAAACCTTACGTTATTAACCTTATGGACGATGAATCGAGTTGAGCTCCTTGCCAAGAAAATAACAGAACTTGGGTATTCATGTTTCTATATTCATGCGAAGATGTTGCAAGATCATCGCAATAGAGTATTTCATGATTTCCGCAATGGTGCATGTAGGAATCTCGTTTGTACTGATCTTTTTACTAGAGGAATAGACATTCAAGCTGTCAATGTTGTCATTAATTTTGATTTTCCGAAGAACTCAGAAACTTATCTGCACAGGGTTGGTCGATCAGGGAGGTTTGGACACCTTGGTTTAGCCGTGAACTTGATTACTTACGAAGACCGCTTTAATTTGGTTTCCTTTGCATTTGTGGTGGATGTGGCTGTTCAATTTGTAGTAAAGCATGAGAGGAGATGCAGTATGAGAATTTGGTTATTGTGGGACTGTGGGGAATGA 1098 0.3989 MARLKIPPPDTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQAVILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCVLKDCSMLVMDEADKLLSPEFQPSIEQLIHLLPTIRQILMFSATFPVTVKDFKDRYLKNLTLLTLWTMNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLVSFAFVVDVAVQFVVKHERRCSMRIWLLWDCGE 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g1411 365 FunFam ATP-dependent RNA helicase DDX6 5 227 - -
Lele39g1411 365 SMART helicmild6 234 315 IPR001650 -
Lele39g1411 365 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 171 179 IPR000629 -
Lele39g1411 365 CDD SF2_C_DEAD 231 324 - -
Lele39g1411 365 CDD DEADc_DDX6 26 221 - -
Lele39g1411 365 Gene3D - 22 219 IPR027417 -
Lele39g1411 365 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 3 232 - -
Lele39g1411 365 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 24 52 IPR014014 GO:0003724
Lele39g1411 365 SMART ultradead3 43 241 IPR014001 -
Lele39g1411 365 Pfam DEAD/DEAH box helicase 49 213 IPR011545 GO:0003676|GO:0005524
Lele39g1411 365 Gene3D - 220 330 IPR027417 -
Lele39g1411 365 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 55 225 IPR014001 -
Lele39g1411 365 Pfam Helicase conserved C-terminal domain 221 315 IPR001650 -
Lele39g1411 365 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 61 351 IPR027417 -
Lele39g1411 365 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 14 224 IPR027417 -
Lele39g1411 365 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 214 354 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g1411 Lele-ChrLele39 22310470 22314439 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele39g1411 24 344 Eukaryotic Initiation Factors Gene Family AT1G72730 36.264 2.76e-72 229