Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g1404 ATGGGAATTCATTGCTCCACACTCATTCCATGCTGTGTGAATTCACAAGTGAAGGCATCTGCTCTTGAACCTCTTGATGCTGTTAACGAGGATACAAGCGAGACCAATGACTGGCCTGCATTCCGTGAATATACATTTGAGCATCTTAAGAATGCAACATCTGGTTTTGCTGTGGAGAATATTGTATCTGAACATGGGGAGAAGGCTCCGAATGTTGTTTACAAAGGGAAGCTGGAGAATCAAATGAGAATTGCTGTTAAGCGTTTCAATAGAAATGCTTGGCCTGATGCCCGGCAATTTTTGGAGGAAGCAAGATCAGTTGGTCAGCTCCGTAACCAAAGATTGGCAAATTTGCTTGGTTGTTGTTGTGAAGATGATGAGAGGTTGCTTGTGGCTGAATATATGCCAAATGAAACACTTGCCAAACACCTTTTTCATTGGGAAACACAACCTATGAAATGGGCAATGCGACTGAGAGTCATTCTATATATTGCGCAAGCTCTAGAATACTGCACAAGTAAAGGGCGTGCTCTCTATCATGACCTTAATGCATATAGGGTTCTTTTTGATGAGGATGGCAATCCTAGGCTTTCAAGTTTTGGCCTTATGAAGAATAGTAGGGATGGGAAAAGTTATAGCACGAATTTGGCATTTACCCCACCAGAGTATCTGAGAACTGGGAGAGTAACACCAGAAAGTGTAATCTATAGCTTTGGTACTCTTTTGCTTGATCTTCTTAGCGGGAAGCATATCCCCCCAAGCCATGCCCTTGACTTGATTCGGGACAGAAATCTTCAGATGCTGACAGACTCTTGTTTGGAAGGACAGTTTTCTGATGATGATCGAACCGAGTTGGTACAGTTGGCATCTCGATGTTTACAGTATGAACCTAGAGAACGGCCAAATCCCAAGTCATTGGTGGCTGCGTTGGCACCGCTTCAGAAAGAAGCGGAGGTTCCTTCACATGTCTTGATGGGTGTTCCACACAGCGCTACTTTCTCTTCATTGTCCCCACTTGGTGAAGCATGCTCAAGAAAAGACTTGACTGCTATACATGAAGTTCTGGAAAATATTGGCTATAAAGATGATGAAGGAGTGACAAACGAGTTATCATTCCATATGTGGACTGACCAAATGCAGGACACGCTAAATTGTAAGAAAAAGGGGGATGTTGCTTTCCGACAGAAAGATTTTCAACTTGCTATTGAGTGTTACACTCAGTTCATTGCTGGAACAATGATTTCTCCAACAGTATATGCACGGCGCAGTTTATGTTATCTCATCAGTGACATGCCTCAAGAAGCTTTGAATGATGCAATGCAAGCACAAATAATCTCTCCCGTATGGCACATTGCATCATATCTTCAATCGGTGGCTCTAGCCAAGATCGGGATGGAGAATGAAGCTCAAGTGGCACTTAAAGAAGGCTCAACACAGGAAGCCAAGCGAAATGCAGGTAGTGGACCAAAGGGTTCTTTTGATGGTTTGATTGATTGCTTCAAGAGTTCTGCCATTTTGCAACCGAGTAATGTAGATTGCCATCCTAAACAATCTTAA 1557 0.4297 MGIHCSTLIPCCVNSQVKASALEPLDAVNEDTSETNDWPAFREYTFEHLKNATSGFAVENIVSEHGEKAPNVVYKGKLENQMRIAVKRFNRNAWPDARQFLEEARSVGQLRNQRLANLLGCCCEDDERLLVAEYMPNETLAKHLFHWETQPMKWAMRLRVILYIAQALEYCTSKGRALYHDLNAYRVLFDEDGNPRLSSFGLMKNSRDGKSYSTNLAFTPPEYLRTGRVTPESVIYSFGTLLLDLLSGKHIPPSHALDLIRDRNLQMLTDSCLEGQFSDDDRTELVQLASRCLQYEPRERPNPKSLVAALAPLQKEAEVPSHVLMGVPHSATFSSLSPLGEACSRKDLTAIHEVLENIGYKDDEGVTNELSFHMWTDQMQDTLNCKKKGDVAFRQKDFQLAIECYTQFIAGTMISPTVYARRSLCYLISDMPQEALNDAMQAQIISPVWHIASYLQSVALAKIGMENEAQVALKEGSTQEAKRNAGSGPKGSFDGLIDCFKSSAILQPSNVDCHPKQS 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g1404 518 FunFam probable serine/threonine-protein kinase At4g35230 380 487 - -
Lele39g1404 518 FunFam probable serine/threonine-protein kinase At4g35230 31 134 - -
Lele39g1404 518 Gene3D Phosphorylase Kinase; domain 1 30 134 - -
Lele39g1404 518 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 21 484 IPR045845 GO:0004672|GO:0009742
Lele39g1404 518 ProSiteProfiles Protein kinase domain profile. 59 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele39g1404 518 SUPERFAMILY TPR-like 381 476 IPR011990 GO:0005515
Lele39g1404 518 Gene3D Tetratricopeptide repeat domain 380 487 IPR011990 GO:0005515
Lele39g1404 518 Pfam Protein tyrosine and serine/threonine kinase 72 309 IPR001245 GO:0004672|GO:0006468
Lele39g1404 518 SUPERFAMILY Protein kinase-like (PK-like) 37 317 IPR011009 -
Lele39g1404 518 Gene3D Transferase(Phosphotransferase) domain 1 136 328 - -
Lele39g1404 518 FunFam probable serine/threonine-protein kinase At5g41260 136 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g1404 Lele-ChrLele39 22241889 22247781 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele39g1404 10 313 Glycoside Hydrolase AT3G07070 33.434 5.18e-42 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Lele39g1404 PK_Tyr_Ser-Thr 8.9e-29 CL0016