Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g1392 ATGGGGGAATTTGTAGGGGAGCCTAATCCTGGGGTGGTTGAAGAGAAAATCTATGTTGCTGTGTCTAAAGATGTGAAAGAGTGTAAATTAAATCTGATATGGGCGATACAAAATTCTGGGGAAAAGAAGATTTGCATCCTTCACGTCCATGAGCCTGCAATAACGATCCCCTTGATGGGTGCAAAGTTTCCAGCAAGTGCACTGAAAGACCAGGGAGTTGAAGCATATAGGGAAACAGAAAGGCAAAACATGCATAAAATTCTGAATGAGTATCTTCTGATTTGTCAGCGGATGGGGGTGCGAGCAGAGAAATTGCATATTGAACGGGATTGCATTGAGAAAGGAATTGTGGAACTTGTGTCAGAGTATGACATCCGGAAGCTTGTTATGGGAGCAGCATCTGATAAATCCTATTCTAGGAAAATGATGGACTTGAGATCTAAGAAAGCCATCTATGTACGAGAACAAGCTTCAGCTACTTGTCATATAGAATTTATCTGCAAAGGGCACCTTATATACACAAGGTTCAATAGTTTGGACAAAAGTAAAGGAGAGGCTGCATCTCCTCTCCCACAGCCAAGGTCACAACCTAATGCTGGACGAGCACCCCACTTGAGATCTCAATCCATTGAACTTGGACGGAATCAATGGGTAAGACTCACAAATCCAGCACAAGATCTATTCCGAAGAGTGAGGTCTGGCAATGCTAGACATGAAGGGAGCATGGCAACTGTTTCTTCTCCAGATGACAGTGAGGGATTGTCAACTATCAGGTTGGGTACAGAAGTGAGTTCTGATGAGTCAAAAGGACTGTCTGGAAGGAGTCCTTCAGTTGTCTCAGTATTCTCTGATAGTGGTACACTTGAAGCAGCATTGACCCCAGATTTGATCACTGAGCGGATTGAGAACGTATTAGACTTGAGTGGACAATCTTCATTTAAGAGGGATCTTTCTCATTCATCTCCTCCCAGTGTGCTGGATGGAGGAATGGACTATACTCTCTATGATCAACTTGAACAGACCATGGGCGAGGCTGAAAATGCTAGGCAGGATGTATACCAAGAAACTGTTAGACGAGGGAAAGCTGAAAAAGATGCCATTGATGCTATAAGCAGGGCCAAAGCCTCTGAAATCTTATATACAGAGGAGTTGAAACTGAGGAAAGAGGTAGAGGAAGCACTGGCAAAAACAAAGGAAGAACTTGGACAGATGAAGATCCAAAGTGATAAAGTAAATGAAGAACTCCGACTTGCGTTAGATCAGAAATCATCACTAGAGAGTCAAATTTCATCATCAGAACTAATGGTAGAGGAGTTGGAGCAGAAGATTATCTCTGCTGTGGGTTTGTTGCAAAGTTACAAGAAAGAACGTGATGAATTGGAGTTGCAGCGTGATAATGCATTGAGGGAGGCTGAAGAGTTGAGGAAAAAACCAGCTGAAGCCCCAGGTACGCGTGTGCCTCAATTTTTCTTAGAATTCTCTTTTCCAGAGATTGAAGAAGCAACGAATACTTTTAATCCATCCCTAAAGATTGGAGAAGGTGGATATGGAAGTATATATAAAGGAATGCTACGTCACACTGAGGTGGCTATCAAAATGTTGAACCCTAACAGTTTGCAAGGGCCTTCAGAGTTTCAAAAGGAGGTTGACATATTGAGTAAGTTAAGGCATCCCAATGTTATTACATTCATTGGAGCCTGTCCGGAATCCTGGGCTCTTGTCTATGAGTATTTACCCAATGGAAGCCTTGAGGATCGGCTCATCTGCAAGGATAACACCCCCCCATTATCATGGCAAACTCGAATTCGCATTGCTGCAGAGCTCTGCTCCGCTCTCATCTTTCTTCATTCTAGTAAACCTCACAGCATTGTGCACGGTGACTTAAAACCCTCCAATATTCTCCTTGATGCAAACCTTGTTAGCAAGCTTAGTGACTTTGGAATCAGTCGTCTATTATCTCATCATGGGAGTTCAAGTAACAATACTACAGAGTGCTGGAGAACTGACCCAAAGGGCACTTTTGTCTACATGGATCCTGAATTCCTTGCTTCAGGGGAGCTTACTCCAAAGTCAGATATATATTCACTTGGAATCATATTATTAAGATTGTTGACCGGGAGATCAGCCTTGGGAATAAGGCAGGAAATGAAAAGTGCATTGGATGATGGAAAGTTGAAATCCCTCTTGGATCCTTTGGGTGGAGACTGGCCATTTGTACAGGCTGAACAGCTGTGTCACTTGGCATTGAGATGTTGTGAGATGAACCGAAAGAACCGGCCAGACCTCTATTTAGAAGTCTGGAGGATTCTGGAACCTATGAGCGCTTCTTCTGGAGGCACAAATGCCTTCAGAATTGGTTCTGGAGGGCTTTACCAAACCCCATCATATTTCATTTGTCCAATCTTCCAGGAAGTCATGCAAGATCCGCATGTTGCAGCGGATGGATTTACATACGAAGCAGAGGCCATACGAGGATGGCTGGACAGTGGTCATGAGGCTTCTCCAATGACAAATCATATGCTTGCACATTCCAATCTTGTCCCTAACCTTGCCCTTCGCTCTGCAATCCAGGATTGGGTGGATCTTGACCCTCCTCCGTTCAATCAGCACTACACATTATGCCCGCATCAAAAGCTCCTTTACACTGCACCATGGAATATTGCAAATCTATGGGACTCTTTATTTATGTCGATATGTTTCTTGCAACATTACACATATTGTCTTGTTGATGGGTGGTCTCAGACTGTAAGTGTTGCTGATAAGTGGACTTCCGCTGGAGAAGATGGTTGTTATGGGATGTTATCTATAGGGATGTGTATAACTCTCATGGCATTGGCACGTGCCCACTTTATGGCCTTGTTCATGATAACGCCAGAACAACTGTGGGATTTAACTGGTGATGAAATGATTGACATAGTGGATTGTACTTGGACGGCACTGTTTACACTAGCTGATGGATATATCCTTTTGTCCCTTGTTATATGGCCTTCTCAAGCATTGCATTAA 3006 0.4341 MGEFVGEPNPGVVEEKIYVAVSKDVKECKLNLIWAIQNSGEKKICILHVHEPAITIPLMGAKFPASALKDQGVEAYRETERQNMHKILNEYLLICQRMGVRAEKLHIERDCIEKGIVELVSEYDIRKLVMGAASDKSYSRKMMDLRSKKAIYVREQASATCHIEFICKGHLIYTRFNSLDKSKGEAASPLPQPRSQPNAGRAPHLRSQSIELGRNQWVRLTNPAQDLFRRVRSGNARHEGSMATVSSPDDSEGLSTIRLGTEVSSDESKGLSGRSPSVVSVFSDSGTLEAALTPDLITERIENVLDLSGQSSFKRDLSHSSPPSVLDGGMDYTLYDQLEQTMGEAENARQDVYQETVRRGKAEKDAIDAISRAKASEILYTEELKLRKEVEEALAKTKEELGQMKIQSDKVNEELRLALDQKSSLESQISSSELMVEELEQKIISAVGLLQSYKKERDELELQRDNALREAEELRKKPAEAPGTRVPQFFLEFSFPEIEEATNTFNPSLKIGEGGYGSIYKGMLRHTEVAIKMLNPNSLQGPSEFQKEVDILSKLRHPNVITFIGACPESWALVYEYLPNGSLEDRLICKDNTPPLSWQTRIRIAAELCSALIFLHSSKPHSIVHGDLKPSNILLDANLVSKLSDFGISRLLSHHGSSSNNTTECWRTDPKGTFVYMDPEFLASGELTPKSDIYSLGIILLRLLTGRSALGIRQEMKSALDDGKLKSLLDPLGGDWPFVQAEQLCHLALRCCEMNRKNRPDLYLEVWRILEPMSASSGGTNAFRIGSGGLYQTPSYFICPIFQEVMQDPHVAADGFTYEAEAIRGWLDSGHEASPMTNHMLAHSNLVPNLALRSAIQDWVDLDPPPFNQHYTLCPHQKLLYTAPWNIANLWDSLFMSICFLQHYTYCLVDGWSQTVSVADKWTSAGEDGCYGMLSIGMCITLMALARAHFMALFMITPEQLWDLTGDEMIDIVDCTWTALFTLADGYILLSLVIWPSQALH 1001
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g1392 1001 Gene3D Transferase(Phosphotransferase) domain 1 578 781 - -
Lele39g1392 1001 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 40 134 - -
Lele39g1392 1001 ProSiteProfiles U-box domain profile. 792 866 IPR003613 GO:0004842|GO:0016567
Lele39g1392 1001 ProSiteProfiles Protein kinase domain profile. 505 774 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele39g1392 1001 Pfam Protein kinase domain 509 760 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele39g1392 1001 ProSitePatterns Serine/Threonine protein kinases active-site signature. 623 635 IPR008271 GO:0004672|GO:0006468
Lele39g1392 1001 MobiDBLite consensus disorder prediction 239 255 - -
Lele39g1392 1001 CDD STK_N 16 169 - -
Lele39g1392 1001 CDD RING-Ubox_WDSUB1_like 797 838 - -
Lele39g1392 1001 Coils Coil 335 355 - -
Lele39g1392 1001 Gene3D HUPs 11 140 IPR014729 -
Lele39g1392 1001 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 792 863 IPR013083 -
Lele39g1392 1001 Gene3D Phosphorylase Kinase; domain 1 484 577 - -
Lele39g1392 1001 MobiDBLite consensus disorder prediction 183 204 - -
Lele39g1392 1001 Coils Coil 380 477 - -
Lele39g1392 1001 ProSitePatterns Protein kinases ATP-binding region signature. 511 532 IPR017441 GO:0005524
Lele39g1392 1001 PANTHER OS02G0152300 PROTEIN 17 858 - -
Lele39g1392 1001 SUPERFAMILY Protein kinase-like (PK-like) 486 762 IPR011009 -
Lele39g1392 1001 MobiDBLite consensus disorder prediction 233 255 - -
Lele39g1392 1001 SMART serkin_6 505 773 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele39g1392 1001 SMART Ubox_2 796 859 IPR003613 GO:0004842|GO:0016567
Lele39g1392 1001 Pfam U-box domain 794 860 IPR003613 GO:0004842|GO:0016567
Lele39g1392 1001 SUPERFAMILY RING/U-box 790 860 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g1392 Lele-ChrLele39 22156340 22164862 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele39g1392 4 860 U-box Gene Family AT2G45910 54.726 0.0 903
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Lele39g1392 Pkinase 2.2e-43 CL0016