Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g1386 ATGCAGTCATTGCAACAGCAATTACTTCGAAAACCTGAAGGGAATGAAACTTTTTTAGCATATCAAGCAGCCCTTCAGGGGGCATATGGGGGTAACAATTTTTCATCTCCCAGTGCCATGCAGTTGCCTCAACAATCTCGGAACTTCAATGAATTAACCCAACATGGTCCCAAACAAGAGGTCCAACTCAAGGCTCAAAACATTGAGCAGCAAATGCTAAATCCTGTTCATCAAGCATACCTTCAATATTCACTCCAGGCTGCCCAACAAAAGTCTTCTTTGGCAATCCAGTCTCAGCAGCAAAATAAAATAGGGATGTTAGGGTCTTCATCTGTGAAGGATCAAGAAATACGTTTGGGAAATATGAAAATGCAGGACCTTATGTCCATGCAGGCAGTAAATCAAGCTCAAGGATCTACCTCCAGGAATGTAGCTGAACAATTTTCTCGCGGGGAAAAGAAGATAGAGCAGGGACGGCAGTTAGCCCCTGATCTAAAACGTGAGGGAAAGCCTTCAACCAAGGGACCAGCCACGGCACAGTTAATTCCCGGAAATATGATAAGACCTGTACATGCACCCAATGCTCAGCAGGGCATCCAAAATATCATGAGCAACCAGATTGCAGTGTCTGCTCAATTACAGGCCATGCATGCATGGGCACGTGAGCGTAATATTGATCTATTGCATCCTGAAAATGCTAACTTAATGGCGCAACTCTTTCCTATGATGCAGCCAAGGATGGTCGCTCAACAAAAAGCAAATGACAGCGGCACTGGTGCTCAGTCATCACTACTACCTGTTTCAAAGCAGCAGGTTACATCTCCATCAGGTGTAAGTGATAGCTCAGCACATGCTAATTCATCAAGCGATGCATCTGGGCTGTCTGGTCCTGCAAAAGCCAGGCAGATTCCTTTGAGCCATTTTGGTCCACCGACAAATGCTGTTACTGCTAGCCACTCCAGTGACATGGTAGTGCATCAATTTAATAATCATGGCAGAGAGTCTCAAGTATCCACGAGGCAACCTGTTTTAGTTGGAAATGGAATGCCTTCTGCGCAACCCCAACAGTCCTCTACCAACGAGAATTTGGGTTCAGATCATCATTTGAAAGCAAAAAGTACTTTATCTGGTCCAGAACCTCCGCAAATGCAGTATTTAAGGAAGTTAAACCAATTGTCTCCTCAGGCATCAGCCGCTACAAATGAAGGGGGCTCGGGAAATCATGTGAAATCTCAAGTGGCACCATCTCAGATGCCTCAACAACGAAATGGATTTACCAAACAACAGCTGCATGTTCTTAAGGCACAGATACTGGCATTTAGGCGGCTCAAGAAAGGAGAGGGTACCCTTCCCCAAGAACTTCTTCGATCTATTGTCCCACCACCTCTTGAGTTGCAATTGCAGCAGCCAATCCATCCTTCAGGAGGACAAAATCAATATAAGTCTGCTGGAAACATCATGCCAGAATACTCAAGGCACATAGAATCTGAAGCAAAGGACTTGCAGCATGTCCCTTCAGTTAATGGGCAGGGTTCTTCAAAGCTGGAAACTTTTGTGAGAGATGAGAAATCCACTGTCTCAGCAGTTCATATGCAAGCTAAACCTGTCGCAACAAAGGATCCTGCTCCAATTCTATCTTCTCAAAAGGGAGAGCAACAACCATTTGGTTCCTCTTTTAAGTCAGATCAGGAAAGTGAGTGTGAAACTAGCAGAAATCCTGTTAGGAATGAGTTGCCGTTAGACAGGGGAAAGGCTGTAGTGCCACAGCCTTCTGCATCTGAGTCAATGCAAAATAAGAATCCTACACAAACAAGCGCAGTTGGGCAACCAAAAGATGTAGGATCTACAAGAAAATATCATGGGCCCCTATTTGATTTCCCCTTCTTTACCAGGAAACATGACTCCTTTGGGTCATCAATGATGATAAGCAGCAACAATAATTTGTTACTGGCATATGATGTCAAAGATCTTTTTGCTGAGGAAGGCATGGAAGTACTTAACAAGAAAAGGACAGAGAATTTAAAGAAGATTGAAGGTCTACTAGGAAATAATTTAGAGAGGAAACTAATTAGGCCAGATCTCGTGTTGAGGTTACAAATTGAAGAGAAAAAGCTTCGTCTGAGAGGTCTTCAGGCACATTTAAGGGATGAGATTGATCAACAGCAACAAAAGATAATGGCAATGCCAGACAGGCAATATCGTAAGTTTGTTAGATTGTGTGAGCGTCAGCGGATAGAACTGGCTAGGCAAGTGCAGGTATCACAGAGAGCTATAAGGGAGAAACAACTCAAATCTATATTTCAGTGGCGTAAAAAGCTTCTTGAGGCACACTGGGCCATACGTGATTCTCGGACTGCTCGGAATAGGGGGGTGGCGAAATATCATGAGAGAATGTTGAGGGAGTTTTCAAAACGTAAAGATGATGACAGGAACAAAAGGATGGAAGCCTTGAAAAATAATGATGTCGACAGATATAGGGAGATGTTGCTGGAGCAGCAGACTAGCATGCCGGGTGATGCTGCCGAGAGATACTCTGTTGTTTCAACTTTCTTGACACTGACAGAAGAGTATCTTCATAAGCTGGGAAGTAAGATAACAGCTTCCAAGAATCAACAGGAAGTAGAGGAGGCAGGGAAAGCTGCTGCAGTTGCTGCACGGTTGCAGGGTCTTTCTGAAGAAGAAGTGAGAGCAGCAGCAGCTTGTGCTGGAGAAGAAGTGATGATTAGAAATCGTTTTATGGAGATGAATGCTCCTAAAGATGATTCATCTATCAGCAAATATTACAGCCTTGCTCATGCTGTGAATGAGAAGGTCATAAGGCAACCATCAATGTTGCGGGCTGGAACATTGAGAGATTATCAGCTTGTTGGCTTGCAATGGATGCTTTCTTTGTATAACAACAAGTTAAATGGAATTTTGGCGGATGAGATGGGTCTTGGCAAAACTGTTCAGGTTATGGCATTGATTGCCTATTTGATGGAATTCAAAGGAAATTATGGCCCACATCTCATTATAGTCCCGAATGCTGTTTTGGTTAACTGGAAGGAGGTTTGTGCGTTGAAATTTAATGTCCTTGTGACAACTTATGAGTTCATCATGTATGATCGGTCAAAGCTTTCAAAAATTGACTGGAAGTATATCATAATTGATGAGGCACAGAGGATGAAAGATAGGGATTCAGTTCTAGCACGTGATCTTGATCGTTATCGTTGTCAAAGACGCCTGCTTTTGACTGGAACCCCCTTACAGAATGATTTGAAGGAGCTTTGGTCACTTTTAAACCTACTCCTTCCTGAAGTTTTTGACAATCGGAAAGCATTTCATGATTGGTTCTCGAAACCTTTTCAAAAGGAAGGCCTTAGTCAAAATGCAGAGGATGATTGGCTTGAGACAGAAAAGAAAGTTATAATTATCCATCGACTTCATCAGATTCTTGAGCCATTCATGCTCAGGCGTCGTGTTGAAGATGTAGAAGGCATGCTGCCACCAAAGGTTAGACTGTGGCCTTCTGGTCTTTTGCTTTTTATATGGTGGTTCATTTCTAATATAAGTGCTTCTTGGCAGGTCTCTATAGTTTTGCGATGTAGAATGTCAGCTATCCAGAGTGCTATTTATGACTGGGTCAAATCCACTGGTACCCTTCGTCTTGATCCTGAGGATGAGAAGCATAAGGTTCAAAAGAATCCAGTCTACCAGGCAAAGCAATATAGAACGTTAAATAATAGATGCATGGAGTTGCGTAAAACTTGCAATCATCCATTGCTTAACTACCCATTCTTCAATGACTTATCCAAAGATTTCCTTGTAAAAGCTTGTGGGAAACTATGGATTTTGGATCGAATCCTTATAAAACTTCAAAGGACTGGACACCGAGTTCTGCTCTTTAGTACAATGACAAAACTCTTGGACATTTTGGAAGAATACTTACAATGGCGACGGCTTGTGTACAGAAGAATTGATGGTACAACAAGTTTAGAAGATCGTGAATCAGCTATAGTGGATTTCAATAGTGCTGGTTCAGACTGTTTCATCTTCTTGCTTAGTATTCGAGCTGCTGGGCGAGGCCTTAACCTTCAGTCTGCTGACACAGTAGTCATATATGATCCTGACCCAAATCCTAAAAATGAGGAGCAGGCAGTTGCTAGAGCTCATCGTATTGGGCAGAAAAGAGAAGTCAAAGTTATCTACATGGAAGCTGTTGTGGACAAAATCTCCAGCTATCAAAAAGAGGATGAACTGAGAAGTGGAGGCACTGTTGATATGGAGGAAGAACTTGTAGGTAAAGATCGTTATATTGGATCCATTGAAGGCCTAATAAGGAACAATATTCAACAGTATAAGATTGATATGGCTGACGAGGTCATTAATGCTGGACGATTTGACCAAAGAACAACACATGAAGAGAGACGCTTGACTTTGGAGACATTATTACATGATGAAGAAAGGTATCAGGAGACTGTCCATGATGTTCCCTCACTACAGGAGGTAAATCGCATGATTGCTAGGAGTAAGGAGGAACTTGAATTGTTTGATCAAATGGATGAGGAATTGGATTGGATTGAAGAAATGACAGGGTATGATCAGGTGCCTAAGTGGCTTCGAGTAAGTACAAGAGAAGTAAATGCCACTATTGCTGCTTTATCAAGAAGACCATCAAAGAACACTCTGTTGGGTGGTGACGTTGGCGTAGAATCCAGTGAAATGGGATCTGAAAGGAGAAGGGGACGACCCAAGGGAAAGAAGAATCTTAATTATAAGGAGTTAGACGAAGAAAATGAAGAATTCTCTGAAGCAAGTTCTGATGAAAGAAATGAATATTCGGTCCATGAGGATGAAGGGGAAATTGGAGAATTTGAAGATGATGGGCTGAGCGTGGTAAATGGAGCTCAACCCAATGATAAGGATCAATTGGAAGATGGTCCAATTTGTGATGCTGGATATGAATTTCCTCAGTCTACAGAAAATGCTAGAAACAATCTTACGGCCGAAGGATCTGGATCCCCAGGAACATCCTCAGATAGTCAAAGGTTGACACGGACAGTATCTCCTTCAGTTTCCTCCCAGAAATTTGGTTCCCTCTCTGCATTGGACGCCAGGCCAAGTTCCCTTTCAAAAAGGATTGTATGTGCTAGGTTTGGTTCCGGACCAAGACTGAACTTAGCTGACCTTATTGGTTTTGCAAACTGGAGGACTTTATCGACTGATGAGTTAGAGGAGGGAGAAATTGCTGGATCTTGTGATTCTCACATGGATAATCAACAATCTGGGAGTTGGATTCATGATCGTGATGAAGGTGAAGATGAACAAGTTTTGGAGCCTAAGATTAAGCGTAAACGTAGTCTTCGTGTTAGACCTCGTCATGCAATGGAGAGATCTGAGGAAAAGTCTGGTGGCGAGGTGGGATCTCTTCACAAAGGAGAATCATCTCTTCTGTCTCTTCATGCAGACCATAGATTTCAAGAGCAAGCAAGGATTGATCCTGAAGAAAAGTCATTTGGAGGATCCAATGCCCGCAGGCATGATCAGAATGAGTCATCCTTGAGAGTAAAGAGAAATTTACCTTCAAGAAGAGTAGCTACTACCTCCAAATTTCAAGGCTCACCTAAGCCTAGTCGATTGAATTGCATTTCTACTCCTTCTGAGGATGGTGGGCACTCAAGAGAAAGTTGGAAGGGGAAGCCTATCGACTCTAGTGGGTCTTTGACCTTATCCTCTAAAATGCCTGAAATCATCCAAAGAAGGGTTTCTTCTTACTGGCCGCAATCCTGCAAATATGACTGCTGTCCGTCTGCAACCATACTAGAACATTCTGTTGCCTATATGAAACTATCCTCGCTTCCTTCCCCTGTTGAACTTGGACGGGGAGCTTTGCAAGTGGTGAACTGCTTTGCTGAACTTGGTCAACATTGGTTAAATGAGGGAGAGCATTTTATTGAGGCTGCAGGGTACACAGGTGGATCTGGGAATAGTTTGTTGGATTTGCGGAAGATTGACCAGCGAATTGATAGATTGGAGTATAGTGGAGTTATGGAGCTTGTGTTTGATGTGCAGTTCATGCTGAAGAGTGCAATGCATTTTTATGGATTTTCACATGAGGTAAGATCTGAAGCAAGAAAGGTTCACGATCTCTTTTTTGATATCTTGAAAATTGCTTTTCCTGATACGGATTTCCTAGAAGCAAGAAATGCGCTTCCTTTCTCGGGTCAAATTTCAGCCAGTGCTGTAACATCTCCCAGACAAATGGCTGGCAGCCAAACCAAGAGGCACAGGACGATAAATGAGGTGGAAACTGATGCAAACCCTTCACAGAAGCACCTGCAACGTGGATCTGCTTCAAGTGGGGAAAACACCAGGATCAAAGTTCATATTCCACAGAAGGAATCAAAATCTGGAAATGGGGGTGGCAACAGCCGAGAACATCAGCAGGATGATTCTCCACTGCTCACTCATCCAGGTGAACTGGTTGTATGCAAGAAGAGAAGAAATGACAGGGACAAATCATTGGCGAAGTCTAGGAGTGGGTCAGTTGGCCCTGTCTCACCGCCCAGTGTGGTCCCTGCTGCAAGAAGTCCAGGGCTTGGTTCAATCCCAAAGGATGCTAGACTGGCGATTGGCCAGCCATCTCAGCAACCGAATGGGTCTGGTGGGTCAGGGGGCTGGGCGAATCCGGTAAAGCGGTTAAGGTCAGATTCTGGGAAGAGAAGACCAAGTCATCTGTAG 6720 0.4336 MQSLQQQLLRKPEGNETFLAYQAALQGAYGGNNFSSPSAMQLPQQSRNFNELTQHGPKQEVQLKAQNIEQQMLNPVHQAYLQYSLQAAQQKSSLAIQSQQQNKIGMLGSSSVKDQEIRLGNMKMQDLMSMQAVNQAQGSTSRNVAEQFSRGEKKIEQGRQLAPDLKREGKPSTKGPATAQLIPGNMIRPVHAPNAQQGIQNIMSNQIAVSAQLQAMHAWARERNIDLLHPENANLMAQLFPMMQPRMVAQQKANDSGTGAQSSLLPVSKQQVTSPSGVSDSSAHANSSSDASGLSGPAKARQIPLSHFGPPTNAVTASHSSDMVVHQFNNHGRESQVSTRQPVLVGNGMPSAQPQQSSTNENLGSDHHLKAKSTLSGPEPPQMQYLRKLNQLSPQASAATNEGGSGNHVKSQVAPSQMPQQRNGFTKQQLHVLKAQILAFRRLKKGEGTLPQELLRSIVPPPLELQLQQPIHPSGGQNQYKSAGNIMPEYSRHIESEAKDLQHVPSVNGQGSSKLETFVRDEKSTVSAVHMQAKPVATKDPAPILSSQKGEQQPFGSSFKSDQESECETSRNPVRNELPLDRGKAVVPQPSASESMQNKNPTQTSAVGQPKDVGSTRKYHGPLFDFPFFTRKHDSFGSSMMISSNNNLLLAYDVKDLFAEEGMEVLNKKRTENLKKIEGLLGNNLERKLIRPDLVLRLQIEEKKLRLRGLQAHLRDEIDQQQQKIMAMPDRQYRKFVRLCERQRIELARQVQVSQRAIREKQLKSIFQWRKKLLEAHWAIRDSRTARNRGVAKYHERMLREFSKRKDDDRNKRMEALKNNDVDRYREMLLEQQTSMPGDAAERYSVVSTFLTLTEEYLHKLGSKITASKNQQEVEEAGKAAAVAARLQGLSEEEVRAAAACAGEEVMIRNRFMEMNAPKDDSSISKYYSLAHAVNEKVIRQPSMLRAGTLRDYQLVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKEVCALKFNVLVTTYEFIMYDRSKLSKIDWKYIIIDEAQRMKDRDSVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSKPFQKEGLSQNAEDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGMLPPKVRLWPSGLLLFIWWFISNISASWQVSIVLRCRMSAIQSAIYDWVKSTGTLRLDPEDEKHKVQKNPVYQAKQYRTLNNRCMELRKTCNHPLLNYPFFNDLSKDFLVKACGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRRLVYRRIDGTTSLEDRESAIVDFNSAGSDCFIFLLSIRAAGRGLNLQSADTVVIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSYQKEDELRSGGTVDMEEELVGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRLTLETLLHDEERYQETVHDVPSLQEVNRMIARSKEELELFDQMDEELDWIEEMTGYDQVPKWLRVSTREVNATIAALSRRPSKNTLLGGDVGVESSEMGSERRRGRPKGKKNLNYKELDEENEEFSEASSDERNEYSVHEDEGEIGEFEDDGLSVVNGAQPNDKDQLEDGPICDAGYEFPQSTENARNNLTAEGSGSPGTSSDSQRLTRTVSPSVSSQKFGSLSALDARPSSLSKRIVCARFGSGPRLNLADLIGFANWRTLSTDELEEGEIAGSCDSHMDNQQSGSWIHDRDEGEDEQVLEPKIKRKRSLRVRPRHAMERSEEKSGGEVGSLHKGESSLLSLHADHRFQEQARIDPEEKSFGGSNARRHDQNESSLRVKRNLPSRRVATTSKFQGSPKPSRLNCISTPSEDGGHSRESWKGKPIDSSGSLTLSSKMPEIIQRRVSSYWPQSCKYDCCPSATILEHSVAYMKLSSLPSPVELGRGALQVVNCFAELGQHWLNEGEHFIEAAGYTGGSGNSLLDLRKIDQRIDRLEYSGVMELVFDVQFMLKSAMHFYGFSHEVRSEARKVHDLFFDILKIAFPDTDFLEARNALPFSGQISASAVTSPRQMAGSQTKRHRTINEVETDANPSQKHLQRGSASSGENTRIKVHIPQKESKSGNGGGNSREHQQDDSPLLTHPGELVVCKKRRNDRDKSLAKSRSGSVGPVSPPSVVPAARSPGLGSIPKDARLAIGQPSQQPNGSGGSGGWANPVKRLRSDSGKRRPSHL 2239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g1386 2239 SUPERFAMILY Bromodomain 1993 2057 IPR036427 GO:0005515
Lele39g1386 2239 MobiDBLite consensus disorder prediction 249 317 - -
Lele39g1386 2239 MobiDBLite consensus disorder prediction 1824 1898 - -
Lele39g1386 2239 MobiDBLite consensus disorder prediction 344 364 - -
Lele39g1386 2239 CDD Bromodomain 1993 2048 - -
Lele39g1386 2239 Gene3D - 1990 2062 IPR036427 GO:0005515
Lele39g1386 2239 ProSiteProfiles QLQ domain profile. 424 460 IPR014978 GO:0005524|GO:0005634|GO:0006355
Lele39g1386 2239 Pfam SNF2-related domain 953 1015 IPR000330 GO:0005524|GO:0140658
Lele39g1386 2239 MobiDBLite consensus disorder prediction 545 563 - -
Lele39g1386 2239 Pfam QLQ 425 458 IPR014978 GO:0005524|GO:0005634|GO:0006355
Lele39g1386 2239 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 931 1152 IPR027417 -
Lele39g1386 2239 PANTHER SNF2/RAD54 HELICASE FAMILY 696 1165 - -
Lele39g1386 2239 Gene3D - 1186 1409 IPR027417 -
Lele39g1386 2239 MobiDBLite consensus disorder prediction 1855 1883 - -
Lele39g1386 2239 SMART ultradead3 946 1107 IPR014001 -
Lele39g1386 2239 Pfam SNF2-related domain 1021 1165 IPR000330 GO:0005524|GO:0140658
Lele39g1386 2239 MobiDBLite consensus disorder prediction 147 171 - -
Lele39g1386 2239 CDD SF2_C_SNF 1272 1397 - -
Lele39g1386 2239 MobiDBLite consensus disorder prediction 136 180 - -
Lele39g1386 2239 Gene3D - 752 825 - -
Lele39g1386 2239 MobiDBLite consensus disorder prediction 2074 2239 - -
Lele39g1386 2239 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 962 1099 IPR014001 -
Lele39g1386 2239 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1277 1454 IPR001650 -
Lele39g1386 2239 Gene3D - 1018 1169 IPR038718 -
Lele39g1386 2239 Gene3D - 919 1017 IPR038718 -
Lele39g1386 2239 MobiDBLite consensus disorder prediction 564 578 - -
Lele39g1386 2239 Coils Coil 1493 1513 - -
Lele39g1386 2239 MobiDBLite consensus disorder prediction 1756 1776 - -
Lele39g1386 2239 MobiDBLite consensus disorder prediction 1745 1805 - -
Lele39g1386 2239 MobiDBLite consensus disorder prediction 249 295 - -
Lele39g1386 2239 MobiDBLite consensus disorder prediction 1824 1851 - -
Lele39g1386 2239 MobiDBLite consensus disorder prediction 590 611 - -
Lele39g1386 2239 MobiDBLite consensus disorder prediction 2074 2088 - -
Lele39g1386 2239 MobiDBLite consensus disorder prediction 526 612 - -
Lele39g1386 2239 MobiDBLite consensus disorder prediction 2096 2119 - -
Lele39g1386 2239 Pfam Helicase conserved C-terminal domain 1276 1387 IPR001650 -
Lele39g1386 2239 Coils Coil 1585 1605 - -
Lele39g1386 2239 MobiDBLite consensus disorder prediction 1786 1801 - -
Lele39g1386 2239 SMART QLQ_2 423 460 IPR014978 GO:0005524|GO:0005634|GO:0006355
Lele39g1386 2239 MobiDBLite consensus disorder prediction 1553 1692 - -
Lele39g1386 2239 MobiDBLite consensus disorder prediction 1651 1692 - -
Lele39g1386 2239 FunFam ATP-dependent helicase BRM 1186 1396 - -
Lele39g1386 2239 MobiDBLite consensus disorder prediction 344 382 - -
Lele39g1386 2239 MobiDBLite consensus disorder prediction 394 423 - -
Lele39g1386 2239 MobiDBLite consensus disorder prediction 2154 2170 - -
Lele39g1386 2239 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1190 1517 IPR027417 -
Lele39g1386 2239 SMART helicmild6 1303 1387 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g1386 Lele-ChrLele39 22105808 22116676 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele39g1386 971 1428 RAD5 or RAD16-like Gene Family AT1G02670 24.549 6.97e-25 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lele39g1386 SNF2_N 2.9e-33 CL0023