Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g1385 ATGGCAAGGTGGTCGATACCTGATGAGGCTCAATATTCATTTGATCGATTTATTGAGTATTTTAAAGAGATCTCTACCCATAATTCTTTTCGACCTATTCCACCCATGCTTGGTAATGGGCAACCAGTGGATTTAAAGACCTTATTTTTAATTGTGATAGGGAAAGGAGGGTATGATGGAGTCTCCAAAAACAATTTATGGAATTTGGTAGCCGAAAGATCTGGGTTAGGCGTGAATATTGGTTCATCAGCAAAGTTGATCTATTATAAGTATTTAGGCATTTTAGATACATGGCTCATACAATTTTCTGAGGGTAGGATACTTGGTTATAGTTTGATTGATGATGGAATCAAGTTTGGTAGGAAACTGATGGAACTTCAAGCTAAAATAAGAAGGCTATTGTCAGATTATATTGTTCAAGATACAGGAGATAACATATCTCAAATTTATGATTTCAAAAATAAATATGACTTTCTGGACGATGGAGTAAAGAGTAAAGTTCAGGATGATGGATTTCTTGGTTTGGATATGCCAAGAAACTTGTTCAATATTGATGACACAATGGCATTCAAGGAGTCTGAAGGAAGGAAGATCATTGCAAAGAAGCTAGTAAATGCATTAGATGTAGGGGATTCATCTAATAATAATGAAGCGAGCAATGTGCCTAGTCTGTCTAATGGAGGAAAGAGATTTCATAATGACGATGATGTCTTGATATTAGATACATCAAATGTTAATAAGGAGAACTTTGGGGGTAAGAGAAAAATAAAGTCTAGGCAAGCAATGCCATGTTGGGTAACTAGCGTCGCAAAGAATCCATGTGATCCTATTGTTTGTTCAACACTTGAAAGATCAAAGTGGAGTTCTCAAACTTCCGAGGAGATTAAGAAGCAAGTTTTGTTGTTTCGAAAGGCTGTCTTTATGAAAAGAAATGTTGAGTCCAGCAAACAACATGACGGTTCACAGGAACAACTCTTTGCAATCTTAAGGAAAGGGACTGAAGCTGATTCAAAGAATACTACTCAAAGTCCACAAATTGAAGATACTGCTGAGAAAACTGCACTTTCTTCAGCCCTTGATAAATCTAGCAAAACAACAGTCCCTATAGGGCCAGCTCATCAGGCAAAAGTACCGGAATGGACTGGTGTTGTGACTTCTGAAAGTGATCCTAAATGGTTGGGGACCCAAATTTGGCCATTAAAAAGTAGTGCAATTAAATTGGACTTGGGTGTGGCTTTTTACCAGTGGAATTTCAACAAGGTTGGGGAGGAAATTAGCCATTCTTGGACTTATGAAGAGAAGAAGTTCAAGGATGTGTTGCAAGCAAACCTCAAATCACCCAAGAAATGTCTTTGGGATAGTATTTTCAGATCATTTCCTAAGAAAAGCAGAGAAGATTTAGTCAACTACTACTTCAATGTTTTTGTTCTGCGACGTCGAAGATTCCAGAATCGTCACTCTCCAGATAACATTGATAGTGACGATGATGCATCAGAGTCGGAACCTCTGATCAAACCCAAAGCAATTGACTCAGTTGCTAGGAAAAATAGTCCTTATCATGGAGGTGTGTGGCAAGTAAGAGTTGAGCTGCTAGATGCTTATCCATATAAATCTCCTTCCATAGGCTTTTTGTGCTTAAGACTACCTTCTCTACATCCTTCTCTAAACCAAGACAGATTCATGTTACCTGACTTGTTCGATCTCAGGGTTGTAGATGCAGGGTTCCATAATCTCTTTGCAAATTGCAAAATGTGTGTTCATCCACGCACATACACAACACTTTTGGTTACCCTGTTATCAACAAAAGTACTTTCATTTCAGAAGTACTGTGAGAAGCATGCCAAGCATGAAGACATCGGAGCTGCTACAGAAAAAATATCAAGTGATGAGGAGCTAAGTGAATATGAATATGATTCAGGTGATGATGACCAGGTAGCCCGGGAAGCGGATCCCTGA 1956 0.3855 MARWSIPDEAQYSFDRFIEYFKEISTHNSFRPIPPMLGNGQPVDLKTLFLIVIGKGGYDGVSKNNLWNLVAERSGLGVNIGSSAKLIYYKYLGILDTWLIQFSEGRILGYSLIDDGIKFGRKLMELQAKIRRLLSDYIVQDTGDNISQIYDFKNKYDFLDDGVKSKVQDDGFLGLDMPRNLFNIDDTMAFKESEGRKIIAKKLVNALDVGDSSNNNEASNVPSLSNGGKRFHNDDDVLILDTSNVNKENFGGKRKIKSRQAMPCWVTSVAKNPCDPIVCSTLERSKWSSQTSEEIKKQVLLFRKAVFMKRNVESSKQHDGSQEQLFAILRKGTEADSKNTTQSPQIEDTAEKTALSSALDKSSKTTVPIGPAHQAKVPEWTGVVTSESDPKWLGTQIWPLKSSAIKLDLGVAFYQWNFNKVGEEISHSWTYEEKKFKDVLQANLKSPKKCLWDSIFRSFPKKSREDLVNYYFNVFVLRRRRFQNRHSPDNIDSDDDASESEPLIKPKAIDSVARKNSPYHGGVWQVRVELLDAYPYKSPSIGFLCLRLPSLHPSLNQDRFMLPDLFDLRVVDAGFHNLFANCKMCVHPRTYTTLLVTLLSTKVLSFQKYCEKHAKHEDIGAATEKISSDEELSEYEYDSGDDDQVAREADP 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g1385 651 Pfam ARID/BRIGHT DNA binding domain 16 92 IPR001606 GO:0003677
Lele39g1385 651 SMART ARID_2 5 96 - -
Lele39g1385 651 MobiDBLite consensus disorder prediction 621 651 - -
Lele39g1385 651 ProSiteProfiles ARID domain profile. 7 100 IPR001606 GO:0003677
Lele39g1385 651 SMART bright_3 7 101 IPR001606 GO:0003677
Lele39g1385 651 Gene3D Ubiquitin Conjugating Enzyme 483 600 IPR016135 -
Lele39g1385 651 CDD SANT 428 475 IPR001005 -
Lele39g1385 651 SUPERFAMILY UBC-like 514 567 IPR016135 -
Lele39g1385 651 CDD ARID 15 92 - -
Lele39g1385 651 SUPERFAMILY ARID-like 17 104 IPR036431 GO:0003677
Lele39g1385 651 Gene3D - 8 105 IPR036431 GO:0003677
Lele39g1385 651 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 28 402 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g1385 Lele-ChrLele39 22098729 22104471 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Lele39g1385 ARID 1.9e-08 CL0123