Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g1381 ATGATGGCCGGAGCAAGGTTTTCCTATCTGAAACGTCTCCAGAAATATTCAGCTAAGGGTTCTTTTAACGTGGAATTAGTTCAGCCAAATCAACGTATCATGAACCTTACAAGATCTAGGGATTGCGTTCATTTAAGATTTCTGAGTACTTCATTCACTCAAGCTTATTCCAAAAGAGAGTTGCAGTTACCTGAAATTTTTTCGAAGAACCAGTTTAGAACCATGACTTCTGGAAACAGCAACCTCTTCACGACCAAACCTGGGTCTTCTTTTTCTCCTAAATTTTCTAGTTTTTCCTTCCATAACGCTCTTCCTTCTGCTTCGCTTTCAATGGCCCTCTTGTTGAATCATAGATCATATTCTTCATCTCTGAGTGGAAACGGAAGTAGAGATGGGAGCACTGGTTTTCCTTCTAATTCTGTGGCAGGTGACATGAATGCCAGCAATGATTCTATTGGTACCAGTGATTGGGCTGATAAAATCAAAGATGCTTGGCAGAGTGCAGTAGAGACAGCAACATATTCTGCACAAAAGGTTAAAGAAGCCTCTGATGAGTTGACTTCATATGCTCAACAGTTGCTCGAATCACATCCATGCCTTAATGGTGTGGTTATTCCAGTTGGTGGTACATTGACTGCCACACTTATAGCATGGATTCTGATGCCTCGGATTTTAAGGAAATTTCACAAATATGCTATGCAAGGTCCTGCTGCAATATTTCCAGGAAGCAAATCTGTGGAGCAAGTTCCTTATGAGAAAAGTTTTTGGGGTGCTTTGGAGGATCCAGTGCGATATTTGGTCACCTTCATGGCATTCTCACAGATTGGTGTTCTGGTAGCTCCAACAACTGTGGCCTCACAATACCTTTCACAGGCTTGGAGGGGTGCAGTGATCCTTTCATTTGTGTGGTTTTTGTATCGATGTAAAACAAATGTCTTGGCACGTATTTTGTCAAGTCAAAATTTACTTGGGCTTGATCGAGATAAATTGCTCGCTCTAGACAAAATATCATCTGTTGGTCTATTTGTGATTGGTATAATGGCTTTAGCTGAGGCTTGTGGTGTGGCCGTGCAATCTATTATAACTGTTGGTGGTATAGGAGGAGTTGCCACTGCTTTTGCTGCTAGAGACATACTTGGCAATGTATTCAGTGGGTTGTCTATACAGTTTTCAAAGCCCTTTACAGTTGGAGATACAATAAAAGCTGGCTCGGTAGAGGGTCAGGTGGTGGAAATGGGGCTTACTACCACATCATTGCTGAATGCTGAGAAGTTCCCAGTTATAGTGCCAAACTCACTTTTTTCTAGCCAGGTAATAGTGAATAAGTCTCGTGCTCAATGCCGTGGCATCATATCTAAAATTCCTTTGCGAATTGGGGATATAAATAAGATTCCCAAGATATCAGATGACATCAAGAGCATGCTAAGAGCAAATGCTAAGGTTTTCTTAGAGAAAGAGGTTCCTTACTGTTACTTGTCGCACATTGAAAGTTCATATGCAGAATTGACTATTGGATACAACCTCAAACACATGCGTAAAGATGAGTGGTACTCTGCAGAACAAGATATTCTGCTGCAGGCAGCCCAGATTATAAAGATGCATGGTGCTGAACTAGGCAATACCTGGCAAAACATGCCTTGA 1641 0.415 MMAGARFSYLKRLQKYSAKGSFNVELVQPNQRIMNLTRSRDCVHLRFLSTSFTQAYSKRELQLPEIFSKNQFRTMTSGNSNLFTTKPGSSFSPKFSSFSFHNALPSASLSMALLLNHRSYSSSLSGNGSRDGSTGFPSNSVAGDMNASNDSIGTSDWADKIKDAWQSAVETATYSAQKVKEASDELTSYAQQLLESHPCLNGVVIPVGGTLTATLIAWILMPRILRKFHKYAMQGPAAIFPGSKSVEQVPYEKSFWGALEDPVRYLVTFMAFSQIGVLVAPTTVASQYLSQAWRGAVILSFVWFLYRCKTNVLARILSSQNLLGLDRDKLLALDKISSVGLFVIGIMALAEACGVAVQSIITVGGIGGVATAFAARDILGNVFSGLSIQFSKPFTVGDTIKAGSVEGQVVEMGLTTTSLLNAEKFPVIVPNSLFSSQVIVNKSRAQCRGIISKIPLRIGDINKIPKISDDIKSMLRANAKVFLEKEVPYCYLSHIESSYAELTIGYNLKHMRKDEWYSAEQDILLQAAQIIKMHGAELGNTWQNMP 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g1381 546 Gene3D - 393 441 IPR023408 -
Lele39g1381 546 SUPERFAMILY Sm-like ribonucleoproteins 377 442 IPR010920 -
Lele39g1381 546 PANTHER YNAI-RELATED MECHANOSENSITIVE ION CHANNEL 157 541 - -
Lele39g1381 546 SUPERFAMILY Mechanosensitive channel protein MscS (YggB), transmembrane region 290 376 IPR011014 GO:0016020
Lele39g1381 546 Pfam Mechanosensitive ion channel 335 537 IPR006685 GO:0016020|GO:0055085
Lele39g1381 546 MobiDBLite consensus disorder prediction 124 145 - -
Lele39g1381 546 Gene3D - 288 392 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g1381 Lele-ChrLele39 22070750 22073976 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele39g1381 115 544 Mechanosensitive Ion Channel Family AT4G00290 63.023 0.0 559