Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g1378 ATGGCCAATCCTTCGCTTCTCCCGTCCTCAACGTCGTCGTTTCTGGGTCAATTTCGACTCTTTCCGGCTCCATTGTCACCCGGACTTCTCTACAGAAATGGGAATGGGGGCGCGGTGGCGCCGGTGAAGGCCACTGCTTCTGCTTCTGAGTCCGGGGTTGTATTGGTGGAGAAGTCTGAGGCAGAGAAGTCCCACCGGCTCAAAATAACTTACACTGAGAAAATCGTTCCTTTGCTCATGGAAGAATTCAACTACACCAATCTACACGAGGTCCCTAAAATTGAGAAGGTCGTGGTTAATTGCGGTATCGGAGATGCTGCACAAAATGCAAAGGGTTTGGAGGCAGCAATGAATGATCTAGCACTCATCACAGGGCAGAGGCCTGTTAAGACACGAGCGAGGGCTTCAGTTGCCACCTTCAAGATCAGGGAAGGCCAACCCCTTGGAATTGCTGTGACACTGAGAGGAAAAATGATGTTCTCATTCCTAGACCGACTTGTCAACTTGGGGCTTCCTAGGACGAGAGATTTCCAAGGTGTCAACCCCAACAGTTTCGATGGACACGGGAATTACAGCGTCGGCATCAAGGACCAGAGCGTGTTCCCAGAAATCAGGTCTGATATCGTGAGTAAGCCTAGAGGAATGGACGTATGCATAACAACAACGGCGAAAACTGATCAAGAAGCAAGCAGATTACTGGTTCTTATGGGCATGCCCTTCAGAGAGGGTGGTGGTCCTGCTTCAACAATTCGCAAGAAGAAGCTCAAGTCTCACCATTTTGATTCAAAGTCAAAGGGCAGAGGAAGGAGGTGA 813 0.4982 MANPSLLPSSTSSFLGQFRLFPAPLSPGLLYRNGNGGAVAPVKATASASESGVVLVEKSEAEKSHRLKITYTEKIVPLLMEEFNYTNLHEVPKIEKVVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARASVATFKIREGQPLGIAVTLRGKMMFSFLDRLVNLGLPRTRDFQGVNPNSFDGHGNYSVGIKDQSVFPEIRSDIVSKPRGMDVCITTTAKTDQEASRLLVLMGMPFREGGGPASTIRKKKLKSHHFDSKSKGRGRR 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g1378 270 Gene3D - 58 242 IPR022803 -
Lele39g1378 270 Pfam Ribosomal protein L5 87 143 IPR031310 -
Lele39g1378 270 MobiDBLite consensus disorder prediction 251 270 - -
Lele39g1378 270 PANTHER 60S RIBOSOMAL PROTEIN L11-RELATED 70 243 IPR002132 GO:0003735|GO:0005840|GO:0006412
Lele39g1378 270 ProSitePatterns Ribosomal protein L5 signature. 120 136 IPR020929 GO:0003735|GO:0005840|GO:0006412
Lele39g1378 270 Hamap 50S ribosomal protein L5 [rplE]. 64 242 IPR020930 GO:0003735|GO:0005840|GO:0006412
Lele39g1378 270 FunFam 50S ribosomal protein L5 62 242 - -
Lele39g1378 270 MobiDBLite consensus disorder prediction 243 270 - -
Lele39g1378 270 Pfam ribosomal L5P family C-terminus 147 240 IPR031309 -
Lele39g1378 270 SUPERFAMILY RL5-like 66 241 IPR022803 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g1378 Lele-ChrLele39 22051049 22053226 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele39g1378 93 220 Cytoplasmic Ribosomal Protein Gene Family AT5G45775 27.344 1.78e-06 45.4