Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g1356 ATGAGGGCAACCGGCGGATTATCTGAGCAGAAAATCATCACCAGAAGGCTTGTGAGAAATTTGTGCTTTTCTGGTGTGACCCCGAGAGTCGTTCGGATTTCCGTCGCTGACAAGTATGCTACTGATGATTCTTCCAGTGATGAAGACGATAGAGAGGGACGGTTTTCTTCTTCTCACCCTGTGAAGAAGTTCGTCCATGAGATCAGAATCGAAGATTTCTCGAGTTTCATGGCTAACAGGGAAGTGAACGGTGATTCCAGGCCCATTCTGAAGCACAAGAAGAGGGAGAGGCGACCTACAATGGCCAGAAGGAAACAGAGCCTCCCCAAGGGGAGCAAGTTTCGCGGCGTCCGGCAGCGACTGTGGGGGAAATGGGCGGCGGAGATCCGAGACCCGTTTCTGCGAGTTCGGAAGTGGCTCGGCACGTTTGACACGGCGGAGGAAGCGGCTTTGAGGTATGACATAGAAGCCATTCGTCTAAGAGGAGCCGATGCTCTCACAAATTTAATAAAACCTCCAGAGAAACATGAATCTATAGTGCTACCGTTAAGCAATCACGAGTCCCAAGGATCAGTGGAGAGTCCTCTGAAGAAGAAGAGCAAGTGGTTGGAAAATGAGTGTGTTTACGATTCAAGAAAAGAGTCTCACGATTTATTACCGTCCTCGTCTTCCTCGCCGACTTCTGTTCTTAGATACAGTGGGGGAGGGTCCTCTGAACCTGCAGGGTGGGTCGGCATCGAGGAATCCAGAGAAGAAGAAGACGAAAAGTTCTTGTTCCTAGATTCATCATCATCAGAATTCGTATCCTGTTGTTATTCGGATAACGAAACTCCTCTTAGCCCCCCATTGTTTTTTGAATCCGGCGTGCCACAACTGATTTCTAGCGAGATTCTGAGGGACATTCCATTTCAAGTTGATGATGATTTTGAATCTTCCAAGTGGTTCGTTGATCATTACTTTCAGGATCCTTTGCCTCTGAAATAA 984 0.4797 MRATGGLSEQKIITRRLVRNLCFSGVTPRVVRISVADKYATDDSSSDEDDREGRFSSSHPVKKFVHEIRIEDFSSFMANREVNGDSRPILKHKKRERRPTMARRKQSLPKGSKFRGVRQRLWGKWAAEIRDPFLRVRKWLGTFDTAEEAALRYDIEAIRLRGADALTNLIKPPEKHESIVLPLSNHESQGSVESPLKKKSKWLENECVYDSRKESHDLLPSSSSSPTSVLRYSGGGSSEPAGWVGIEESREEEDEKFLFLDSSSSEFVSCCYSDNETPLSPPLFFESGVPQLISSEILRDIPFQVDDDFESSKWFVDHYFQDPLPLK 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g1356 327 MobiDBLite consensus disorder prediction 214 242 - -
Lele39g1356 327 Gene3D AP2/ERF domain 112 170 IPR036955 GO:0003700|GO:0006355
Lele39g1356 327 SUPERFAMILY DNA-binding domain 112 169 IPR016177 GO:0003677
Lele39g1356 327 SMART rav1_2 113 176 IPR001471 GO:0003700|GO:0006355
Lele39g1356 327 MobiDBLite consensus disorder prediction 218 234 - -
Lele39g1356 327 CDD AP2 112 168 IPR001471 GO:0003700|GO:0006355
Lele39g1356 327 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 27 234 - -
Lele39g1356 327 PRINTS Ethylene responsive element binding protein signature 136 152 IPR001471 GO:0003700|GO:0006355
Lele39g1356 327 PRINTS Ethylene responsive element binding protein signature 114 125 IPR001471 GO:0003700|GO:0006355
Lele39g1356 327 ProSiteProfiles AP2/ERF domain profile. 113 170 IPR001471 GO:0003700|GO:0006355
Lele39g1356 327 Pfam AP2 domain 112 162 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g1356 Lele-ChrLele39 21883425 21884408 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele39g1356 11 324 AP2-EREBP Transcription Factor Family AT2G46310 35.494 5.08e-33 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele39g1356 AP2 4.8e-10 CL0081