LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele39g1342	ATGGCTGATTCTGGTGACCTGCCGAAATCTGCTGAAAATCAACAATCCGAGCAAGTGTGTAATTTCTTCAAGAAACCGGTTAATAGGAAGAATTTAAGAAAACGTACTGTTGATGAAGAAGATAACGAGGAGGATTCAAAAAATGAAAGCTCTTTTTTACATATCCAGAAAAAACAGGTGAAGCCTGACAATAAGTTGTACTTTTCCACTGGTCCCTCAAAAAGCACTACATCTAAAGTACAAGAGGAGCCTGAAAAGAAACTGTTTCATTTCGAGTCTTCAAAAGAGATTCAGGTTCAACATGATAACAAAGCAACAGCCACTCTTGAGACTGAAACCGATTTTTCAAGAGATGCTCGAGCTATTCGTGAAAGAGCCCTTAAGCAAGCAGAGGAGAGTTTGAAGGGTAAAGTCACTAATTCTGGAGAAGAAAAATTGTACAAGGGCATCAATAGTTACAAAGATTACAAGGCTGGCTTTCGTAGAGAGCAAACAATTGCTAGTGAAAAAGCTGGTGGGGCCCATGGTCCTCTTAGGGCATCTGCTCATATAAGAGTTTCAGCAAGATTTGATTATCAGCCAGACATATGTAAGGATTACAAGGAGACTGGTTACTGTGGGTATGGTGATTCGTGTAAGTTTATGCATGATCGAGGAGATTACAAGTCTGGGTGGCAAATGGAGAAGGAATGGGAGGAAGCTGAGAAAGCTAGGAGAATGAGATTGGCTGCAGGAGAGGATTCGGATGAGGAGGGTGCTAATGTGAGTGATGAAGATGATGATGATTCATTACCATTTGCATGTTTCATTTGTAGGGAGCCCTTCGTGGATCCTGTTGTAACAAACTGCAAGCACTACTTCTGCGAGCATTGTGCGTTGAAGCATCATTCAAAGAATAAGAAATGTTTTGTGTGCAACAAGCCTACCCTTGGCATTTTTAATGCAGCTCATGAGATACGCAAGAAGATGGCTGCAGAGGCAAACTCTTTGACTGCAGTTCTTACTGTTGACATGTATGCTTGTACCTCTCGGCACTGGGTGGTGGTTGGGGAGGGAGTGACCGTAACAGGGTTGCAGATTGTGGGAGGTAAAGTTTTTCTCCGTTCTAACTTCATCTTCCCTGAGATCAGGGTTATTTGCTCTGAGTTTGCATTTGCCGGTGGACTTCAACTATGTTGCCTAACGTTTTGGATTGCTCGGATGCAATCCATTGTTTTCTGGCTTGAGCCTTGTGATGAAGCCATGGAGTTGGACTTGTGTCATTATCTCCGTTTTTTTTTTTTGGGTGACAATGTCATTATCTCCTTTGTTATCAAGCAGCGTCACTTCAGTGGCCAAAATTCATTAATCCCCTGCCTCCTTATTCTTGGGACAGCTCTTGAATGGTTTCTTGAGAATAAGGTATCATTGACAGCTTCGAAACTGGCGCAATCTATGCATTTAATGGAGCTGGCATTGGGAGTTTATGCTGCCATAATTGAAGGCAAGTGTCAAAACTATGTCAACAGAGGAAGAAGTGAGAAATCGCAATGA	1533	0.4227	MADSGDLPKSAENQQSEQVCNFFKKPVNRKNLRKRTVDEEDNEEDSKNESSFLHIQKKQVKPDNKLYFSTGPSKSTTSKVQEEPEKKLFHFESSKEIQVQHDNKATATLETETDFSRDARAIRERALKQAEESLKGKVTNSGEEKLYKGINSYKDYKAGFRREQTIASEKAGGAHGPLRASAHIRVSARFDYQPDICKDYKETGYCGYGDSCKFMHDRGDYKSGWQMEKEWEEAEKARRMRLAAGEDSDEEGANVSDEDDDDSLPFACFICREPFVDPVVTNCKHYFCEHCALKHHSKNKKCFVCNKPTLGIFNAAHEIRKKMAAEANSLTAVLTVDMYACTSRHWVVVGEGVTVTGLQIVGGKVFLRSNFIFPEIRVICSEFAFAGGLQLCCLTFWIARMQSIVFWLEPCDEAMELDLCHYLRFFFLGDNVIISFVIKQRHFSGQNSLIPCLLILGTALEWFLENKVSLTASKLAQSMHLMELALGVYAAIIEGKCQNYVNRGRSEKSQ	510

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele39g1342	510	FunFam	Zinc finger CCCH domain-containing protein 1	189	223	-	-
	Lele39g1342	510	MobiDBLite	consensus disorder prediction	238	260	-	-
	Lele39g1342	510	SUPERFAMILY	RING/U-box	267	310	-	-
	Lele39g1342	510	MobiDBLite	consensus disorder prediction	8	22	-	-
	Lele39g1342	510	SMART	c3hfinal6	191	218	IPR000571	GO:0046872
	Lele39g1342	510	MobiDBLite	consensus disorder prediction	1	84	-	-
	Lele39g1342	510	ProSiteProfiles	Zinc finger C3H1-type profile.	191	219	IPR000571	GO:0046872
	Lele39g1342	510	PANTHER	ZINC FINGER PROTEIN 183	15	328	IPR039971	-
	Lele39g1342	510	Pfam	Zinc finger, C3HC4 type (RING finger)	267	309	-	-
	Lele39g1342	510	ProSitePatterns	Zinc finger RING-type signature.	283	292	IPR017907	-
	Lele39g1342	510	Gene3D	-	189	223	-	-
	Lele39g1342	510	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	266	325	IPR013083	-
	Lele39g1342	510	MobiDBLite	consensus disorder prediction	32	61	-	-
	Lele39g1342	510	CDD	RING-HC_RNF113A_B	266	306	-	-
	Lele39g1342	510	FunFam	RING finger protein 113A	266	325	-	-
	Lele39g1342	510	SMART	ring_2	268	305	IPR001841	-
	Lele39g1342	510	SUPERFAMILY	CCCH zinc finger	190	222	IPR036855	GO:0046872
	Lele39g1342	510	Pfam	Zinc finger C-x8-C-x5-C-x3-H type (and similar)	192	217	IPR000571	GO:0046872
	Lele39g1342	510	ProSiteProfiles	Zinc finger RING-type profile.	268	306	IPR001841	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele39g1342	Lele-ChrLele39	21771957	21775590	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele39g1342	1	326	C2H2 Transcription Factor Family	AT1G01350	68.750	4.43e-169	479

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C3H	Lele39g1342		zf-C3HC4_3	1.8e-08	CL0229