Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g1337 ATGGTGGAACAACTGGTTTTTTCAACTCCGTCGTCATCAAGGAAGGTGACTTCTCTGCAGAATCTTCCCGTTTCAACCAGAACAGTAGAATCTATATCAGAAGTTGAAGCCTACGCTCGCATGGCTCATGACTTGAAGCTCCTTGCTTCCCAAAATCGATGCTTTATCAACAAACAGATGGAGCACGCTTTAAGTGATCATGCACGCATGTTTGATAAGAGGTACTTCCTTGAACTTCTACTTGATGTGAAAATGTCACAGCCAAATCTTTTAGGAGAAGTTTCTCACTTATTTAAGGACTGGAGTTCGGAATCATCTTTCGGTGTTGAGAAAACAAATTATGCTGATGATGGATATCCTCAGAGAAAAGTTAGACCAAGAGTAAGAGCTGTGTTTAAGAATATTAGAAGAAGAATCCAGATAAGGCTTGAGAAGATTAAAACCTGGAGAAAATCTGTAAATGCGCATCCAGTAAGTGATGCAACGCCCAAGAAACCGGCTTCGGAGTGGAAGATTCTTGATCCACAGGGGTCTTTCCTTCAGAAATGGAACAAAATATTTGTGATCACATGTGTACTGGCAGTATCTGTGGATCCTCTGTTCTTTTACGTCCCAGTTATTGATAACAACGGAAAATGCCTCGATTTGAATAAACCATTGCAGACTACTGCCAGTGTTCTCCGTACATTCTTTGACCTTTTCTACATTCTCCACATAACATTTCAGTTTCGAACTGGTTTTATTGCCCCTTCTTCTCGAGTATTTGGTAGGGGTGAGCTCATTGATGATCCTAAGGCTATTGCAAGAAGATACTTATCTTCATACTTCATCATTGACATCCTCTCAATTATTCCAGTTCCACAGGCGGTTATTTTAGCAATGAGACATTCAGTACATTCTGAAGAAAAGGACTGGTTATATTATGCAATATTAATCCAATATGTCCCTAGATTTCTTCGGATCTATCCATTATTCACAGAAGTAACTAGAACTTCTGGCATACTCACTGAGACTGCATGGGCTGGCGCTGCATATAATCTCTTTCTCTATATGCTTGCAAGTCATGTGGTTGGAGCTTTCTGGTACCTGTTTTCAGTAGAATCAGAGCTTCGGTGCTGGCACAGAGAATTGAAGATTGCTAGTTTGCCTACATACATCAGTTGTCCATACCAGAATCCAAATGTCAGAACATTTCTCAATAATTCTTGTCCCTTCAAGGATCCTGACGAAATTGACAACCCCAAAGTCTTCAATTTTGGAATGTATACTGATGCTTTAAAATCTCATGTGGTGGAATCAACAATGGATTTTCCTCAGAAGATCTTCTTCTGCTTTTGGTGGGGTTTGCGCAATGTAAGTTCTCTGGGACAAAATCTCAAGACAAGTACATATGTCGGGGAGATCATCTTTGCTTGCTTCATCGCAATCTTTGGGCTGGTTTTGTTCTCATTACTCATTGGAAACATGCAGAAATATCTACAATCTGTAACCGTTAGAGTTGAAGAAATGAGAATCAAGAGGAGGGATGCAGAGAGGTGGATGTCCCACCGTATGCTGCCTGAGCACTTGAGGGAAAGAATCAGACGGTATGAGCATTACAAATGGCAAGAAAACAGGGGTGTGGAAGAGGAAACATTAATTCACAATCTTCCTAAAGATCTCAGAAGAGACATAAAGCGTCACCTTTGCTTGGATTTACTTAAAAAAGTGCCAATGTTTGAGAAAATGGACGAGCAGTTGTTGGATGCACTTAGTGATAGGCTGAAGCCAGTACTTTATACAGAGAAGAGCCACATTATTAGGGAAGGAGATCCAGTGGATCAAATGCTCTTCATTATGAGAGGAAACCTTGCCACAATGACAACAAATGGGGGAAGAACTGGTTTTTTCAACTCTTTCGTGATCAAGGCGGGCGACTTCTGTGGAGAGGAGCTTTTAACATGGGCCTTGGACCCCAACTCATCCTCAAATCTTCCCATTTCAACCAGAACAGTGGAATCTATATCAGAAGTTGAAGCATTCGCTCTCATGGCTAATGACTTGAAGCTCGTTGCTTCCCAATTTCGACGCCTTCACAACAAACACATCCAGCACACTTTCAGGTACTATTCCTTGCAATGGAGGACATGGGCTGCGTGTTTCATACAAGTAGCATGGCGTCGCCACTGTAAAAGGAAGATTGAGAAAGCTTTACGCGAAGCAGAAGACAGGCTACAAGATGCTTTGGCAAAGGAGGAAGGTTCTTCTGTAAGTTTTGGTGCCACCATATATGCATCAAGGTTTGCTGCCAATGCCTTACGCAGCCTGCGAAAAAATGGGGACCGAAAAAACAACAGAACGTCTCAGAGACTGCTGCCTCTGCTGCCTCAGAAGCCAACTGAGCCTGATTTCACTACACAATCTTTAGGAGAAAATTAG 2418 0.4189 MVEQLVFSTPSSSRKVTSLQNLPVSTRTVESISEVEAYARMAHDLKLLASQNRCFINKQMEHALSDHARMFDKRYFLELLLDVKMSQPNLLGEVSHLFKDWSSESSFGVEKTNYADDGYPQRKVRPRVRAVFKNIRRRIQIRLEKIKTWRKSVNAHPVSDATPKKPASEWKILDPQGSFLQKWNKIFVITCVLAVSVDPLFFYVPVIDNNGKCLDLNKPLQTTASVLRTFFDLFYILHITFQFRTGFIAPSSRVFGRGELIDDPKAIARRYLSSYFIIDILSIIPVPQAVILAMRHSVHSEEKDWLYYAILIQYVPRFLRIYPLFTEVTRTSGILTETAWAGAAYNLFLYMLASHVVGAFWYLFSVESELRCWHRELKIASLPTYISCPYQNPNVRTFLNNSCPFKDPDEIDNPKVFNFGMYTDALKSHVVESTMDFPQKIFFCFWWGLRNVSSLGQNLKTSTYVGEIIFACFIAIFGLVLFSLLIGNMQKYLQSVTVRVEEMRIKRRDAERWMSHRMLPEHLRERIRRYEHYKWQENRGVEEETLIHNLPKDLRRDIKRHLCLDLLKKVPMFEKMDEQLLDALSDRLKPVLYTEKSHIIREGDPVDQMLFIMRGNLATMTTNGGRTGFFNSFVIKAGDFCGEELLTWALDPNSSSNLPISTRTVESISEVEAFALMANDLKLVASQFRRLHNKHIQHTFRYYSLQWRTWAACFIQVAWRRHCKRKIEKALREAEDRLQDALAKEEGSSVSFGATIYASRFAANALRSLRKNGDRKNNRTSQRLLPLLPQKPTEPDFTTQSLGEN 805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g1337 805 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 146 797 - -
Lele39g1337 805 MobiDBLite consensus disorder prediction 770 805 - -
Lele39g1337 805 SMART cnmp_10 572 703 IPR000595 -
Lele39g1337 805 FunFam Cyclic nucleotide-gated ion channel 1 570 688 - -
Lele39g1337 805 Gene3D - 185 498 - -
Lele39g1337 805 Coils Coil 724 744 - -
Lele39g1337 805 ProSiteProfiles cAMP/cGMP binding motif profile. 572 656 IPR000595 -
Lele39g1337 805 SUPERFAMILY cAMP-binding domain-like 501 697 IPR018490 -
Lele39g1337 805 MobiDBLite consensus disorder prediction 779 805 - -
Lele39g1337 805 Pfam Ion transport protein 183 500 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Lele39g1337 805 Gene3D Helix hairpin bin 499 563 - -
Lele39g1337 805 FunFam Cyclic nucleotide-gated ion channel 1 499 563 - -
Lele39g1337 805 Gene3D Jelly Rolls 570 690 IPR014710 -
Lele39g1337 805 SUPERFAMILY Voltage-gated potassium channels 174 494 - -
Lele39g1337 805 CDD CAP_ED 572 703 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g1337 Lele-ChrLele39 21731527 21738210 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele39g1337 98 799 Ion Channels AT5G53130 63.955 0.0 916