Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g1333 ATGATAGTTAAGCGGCCTATGAAAATTGAAATTCCGAAGCTGAAGCGATGCCAATTAGAGGAGCCCGATCATGAAGACAGTATGTGTGCAGCGAATCCCAAGAAACGGAGGCCAAATGGGCTTTTATCTCCTGGTATGCCTGCTGAGGATGAATATTTGAGCAGCGGTTCTGGATTTCTGTGCAGTAAAGAATCGCATTGCGGTGGTGACTTACCGTCGAGCTCAGATTCCATGAAGTTGAATACTAAAACAGTACTAAAACCGGGCTCAAAAATGGTTCGTCATCCATTATTGCGGTCGTCGCGAGGTCGCCGCCAGACACTTCCGTCGAAGTTCAGGGATTCGGTTCTTAGTACATGGAAGAATAAAAGAGTCCAAGTGGAGAACACATATTCCAGCTTTAAAGAAGATAATTTTTTAGGGGAAGACAAGTCCAAGTTCAGCGGAATGGAATTTTCAAAACAGGGAGATAGTGTTAACTGCAATCTCAAACATTCAATGTTTTGTTCATATACTGAAATGGAGAAAGAAAGAGCCTTGAGGGCCTCAGATTTGAATGATTTCGACGCCGCGGAGCATGCGAAATCCTTTAATACTGTGAGGACAGCAGTTAAAGAGAGTTGTTCATCGTTAGTTAAAGTTCAGAGTTGTGCGTCGGGACTTAATTCTGAAGGTGTTGACTCGAAGACTAATGGGAAAGCTGAAAAAAGAACAGACATTTACAAACTAGAGGATTTTGCTAGCGGTGATATAGTTTGGGCAAAATGCGGGAAGAGGTATCCGGCATGGCCTGCTATAGTGATTGATCCCATCTTGCAAGCACCCAAATCAGTCCTGAACTGTTGTGTTCCAGGACTATGCATGGGTGAGACAGGGAATGGTATTCCCCTTTACGGAATTCATGGAGAGGGGCAGACCCGGCTATACAGGAGCAAACCAAGTGAGTTTCGAATGGCATTAGAGGAGGCTTTGCTGGCAGAAGATGGTATTCTGGACTCACATTTGGGAGCGGATATTATTACTAAAAGTAATGTTGAAGCTCATCCCAGTGTAGAGATAGAGGTTACGGGTCCATATGATGATCAGGAGGACTACTGCCAGGACCGGGGTCTAGGCCCTTTGTCTCTCCTACTTTGCAAAAGTCCAAGCAATATTGTGGCATTTGCAAAAAGATTTGGCACCATTCAGATGGTGGGAATTGGAGTTATGTGCAAGTGTGGTTCTTGTTGGTCAAGGAAGCAGACACTGAGTGAATGGGAACGGCATACAGGTTGCAAAGCCAAAAAATGGAAATTCAGTGTAAAAAGCTTCAAAGGAAGCAACGCTGATCCCTATTTGTGCACTTGTTCATATGCAGGTGGTGCTCTGAAGCCAACTGATGTTGAAATGCTATGGGTTCATGTGACATGTGCTTGGTTCCGGCCGGAAGTTATTTTCCAAAACCACGAGACAATGGAACCTGCCATTGGAATCCTTAAAATTCCTCCAAATTCTTTTTCAAAGACTTGCATTATCTGTAAACAAAGCCATGGATCGTGCTTAAGTTGTTGCAAATGTGCTACTTATTTTCACGTGATGTGTGCATCCAGAGCTGGATATAGCATGGAATTGCATTCCATGGAGAAGAATGGGAGCCAGATAACAACAAAGATAATATATTGTGCGGTTCATAGGTTTGAGATCCAATCACCTGATTATTCAGTACTGGTTGTGCATACACCTCAAGGGGTTTTCTCTCCCAGAACTGAACTTCAAAATCATAAGGGATGCTTCAGGGGATCAAGGCTAGTTTCACCAAAGGATGTAGAACTTCTTAAAGAGTCCTCAACCTCTGAGATTAACGAGTGTGAGCCATCCTCTGCTGCCAGATGTCGTGTTTACAGAAGGCCTCTTAATAAGAAAGTTGATATGCCAGTAATTCACTTACTGGGTGGACCAATATATCATTCTTTAAGTGCAATAACTCAATTGAACAGTTATAAGGATGTTGAACATTCTAAAGCATTTATCTTGCTCAAGGAACGCCTTGACCATTTGCAGAAAACTGTAAAGCATCAAGTTTGCTTTGGAAAATCTGGCATACATGGATGGGGCCTCTTTGCTTATCGAGATATAGAAGAAGGACAGATGGTCGCTGAGTATTGTGGTGAGCAGGTAAGACGGAGCATTGCTGATTTAAGGGAAGCAAAGTACCGGTCAGAAGGCAAAGATTGTTATCTATTCAAGATCAGTGAGGAAGTTGTAATTGACGCAACAGATAAGGGCAACATAACACGCTTGATAAACCATTCTTGCATGCCGAATTGCTATGCGAGGATTATAAGCTTGGATGATGAGGAGAGCCGAATTGTTCTTATTGCCAAGACCAATATCTCTGCTGGTGAAGAACTAACGTATGACTACTTGTTCGATCCGGATGATCTTGATGAACTGAAAGTTCCCTGTCATTGCAATGCCCCAAATTCTGCACAAGATCTGAATGGTGAGAAAGACCACGACAACGAATGGCAGCAACTTAGTCGACAGAAAATACAGCAGTGGCGTGAAATCTCGGCTATGATTGATCGCTCTCGTGGTGTTGATGCTTGTGTCATTACATTCTCCGTTGGTGGCCTGAGTGTTCTCAACGCCATCGCGGGTGCTTACCCTGAGAACTTGCCGCTTATTTGTATCGTTGGTGGTCCTTCTTCATTATTCTCTCTTTTGTTGTTCCTTCATGATTCTGGTTCCCATAACCTTCTGGGCATGGGAAAGCGCCTTCAAAATGGTGCTGCTTCTGACGGAAATAGCTCAGAAAAGCGCATGCGAAGGAGCAACTCCATTTGTTCTTGCAACTCTCCCCGTCCTCCCTTTCTCTCTCCACATTCCAATTTCAACTGGTACGAAGAGGACATTTGGTCAGAGATTGCCAAGTTTCTGGACGGGAAATCTCTGGTGATGCTGGCAGCCGCAAACCGATGGTTCCGCCGAGTTATTATGGACGACACTATATGGAAGTTTGTGAGCCTGCGTGATCTTCAGGTCCCACCTCCTCCATCACGTGTGGCGTACATGTGGAACAAACTGTACACTTCAGCCTTTGATGGGAGCCACTCATTCATGTTCCACCAGCAGGAGAAACATATAGATTGGATGCGCATTGGTGCTTTTTCCCTTGACTCTTCATTGGCCCTCCTGGCTGAGAGACTAACCTTTCCAAGGAAGATCAGAAAGGTAGAAACGAAGGAACATATGTTGCAGTCTCACGGTTGTTGCATATTAGACAATGTCAAAACTGGGATCTGGATTGCTGACCTGCAGCTTGTACGATGCCCGGTTTGTGATCTCAACACATGCGATGGAACAATGCAGACTTTAGATGCAAGGCATATAGAGCTTTTCCTCTGTGAAGGCTACCAAAATGGGAACTGGGAATACCAGCTAATAGGATCACATGATATCAAAAAGCGAGCAGATGGAGCAGCTGGGGCCATTTTTGATTTCGCGCACTTAAATGATTCTTCGACTTCTGCGGTATTTGAATACCCGTCATGGATAGGTAGACACAATGATTGGCAACCGAAGGCCAAGATTGCTCCCCATGCGGTTGCTGTTAACACGAATTTACAAGATAATGAAGGTCTTCATGTGAAGTACCATGCTATGAAGGCTGGGAATGACGGAGAAGTAGTTGCCATTAGAATCTCCCAGCAGCTCCTTTGA 3702 0.4435 MIVKRPMKIEIPKLKRCQLEEPDHEDSMCAANPKKRRPNGLLSPGMPAEDEYLSSGSGFLCSKESHCGGDLPSSSDSMKLNTKTVLKPGSKMVRHPLLRSSRGRRQTLPSKFRDSVLSTWKNKRVQVENTYSSFKEDNFLGEDKSKFSGMEFSKQGDSVNCNLKHSMFCSYTEMEKERALRASDLNDFDAAEHAKSFNTVRTAVKESCSSLVKVQSCASGLNSEGVDSKTNGKAEKRTDIYKLEDFASGDIVWAKCGKRYPAWPAIVIDPILQAPKSVLNCCVPGLCMGETGNGIPLYGIHGEGQTRLYRSKPSEFRMALEEALLAEDGILDSHLGADIITKSNVEAHPSVEIEVTGPYDDQEDYCQDRGLGPLSLLLCKSPSNIVAFAKRFGTIQMVGIGVMCKCGSCWSRKQTLSEWERHTGCKAKKWKFSVKSFKGSNADPYLCTCSYAGGALKPTDVEMLWVHVTCAWFRPEVIFQNHETMEPAIGILKIPPNSFSKTCIICKQSHGSCLSCCKCATYFHVMCASRAGYSMELHSMEKNGSQITTKIIYCAVHRFEIQSPDYSVLVVHTPQGVFSPRTELQNHKGCFRGSRLVSPKDVELLKESSTSEINECEPSSAARCRVYRRPLNKKVDMPVIHLLGGPIYHSLSAITQLNSYKDVEHSKAFILLKERLDHLQKTVKHQVCFGKSGIHGWGLFAYRDIEEGQMVAEYCGEQVRRSIADLREAKYRSEGKDCYLFKISEEVVIDATDKGNITRLINHSCMPNCYARIISLDDEESRIVLIAKTNISAGEELTYDYLFDPDDLDELKVPCHCNAPNSAQDLNGEKDHDNEWQQLSRQKIQQWREISAMIDRSRGVDACVITFSVGGLSVLNAIAGAYPENLPLICIVGGPSSLFSLLLFLHDSGSHNLLGMGKRLQNGAASDGNSSEKRMRRSNSICSCNSPRPPFLSPHSNFNWYEEDIWSEIAKFLDGKSLVMLAAANRWFRRVIMDDTIWKFVSLRDLQVPPPPSRVAYMWNKLYTSAFDGSHSFMFHQQEKHIDWMRIGAFSLDSSLALLAERLTFPRKIRKVETKEHMLQSHGCCILDNVKTGIWIADLQLVRCPVCDLNTCDGTMQTLDARHIELFLCEGYQNGNWEYQLIGSHDIKKRADGAAGAIFDFAHLNDSSTSAVFEYPSWIGRHNDWQPKAKIAPHAVAVNTNLQDNEGLHVKYHAMKAGNDGEVVAIRISQQLL 1233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g1333 1233 CDD SET_SETD1-like 674 821 - -
Lele39g1333 1233 FunFam Histone-lysine N-methyltransferase 660 827 - -
Lele39g1333 1233 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 443 559 IPR013083 -
Lele39g1333 1233 SUPERFAMILY Tudor/PWWP/MBT 244 289 - -
Lele39g1333 1233 SUPERFAMILY F-box domain 963 1021 IPR036047 GO:0005515
Lele39g1333 1233 FunFam Histone-lysine N-methyltransferase 442 560 - -
Lele39g1333 1233 SMART PHD_3 502 558 IPR001965 -
Lele39g1333 1233 Pfam PHD-zinc-finger like domain 447 557 - -
Lele39g1333 1233 PANTHER F-BOX PROTEIN RMF 927 1233 - -
Lele39g1333 1233 SUPERFAMILY SET domain 679 821 IPR046341 -
Lele39g1333 1233 ProSiteProfiles Extended PHD (ePHD) domain profile. 443 558 IPR034732 -
Lele39g1333 1233 Pfam SET domain 696 801 IPR001214 GO:0005515
Lele39g1333 1233 Gene3D SET domain 662 848 IPR046341 -
Lele39g1333 1233 Gene3D - 851 927 - -
Lele39g1333 1233 Gene3D - 236 284 - -
Lele39g1333 1233 ProSiteProfiles SET domain profile. 685 802 IPR001214 GO:0005515
Lele39g1333 1233 SMART set_7 685 808 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g1333 Lele-ChrLele39 21705911 21719535 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele39g1333 679 821 C2H2 Transcription Factor Family AT2G23740 35.000 1.47e-15 80.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Lele39g1333 zf-HC5HC2H_2 2.7e-26 CL0390